1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gcgcgtctccccccacacgatccgctcggttctaggcgctcgatttggtttgggccgccctggcatttttggggtgtgtgtgattgtggtggattttgatgggggatttttttttgggtgttttgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG
species | Oryza sativa |
transcript | LOC_Os09g26880.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGT-CGCGCGTGAGTACGAGGAGGGCATGEST: gi|29617477|gb|CB622489.1|CB622489
genomic: CCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GGGGCTTTTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGEST: gi|29656047|gb|CB652322.1|CB652322
genomic: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGEST: gi|29656045|gb|CB652320.1|CB652320
genomic: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGEST: gi|88730430|gb|CI754043.1|CI754043
genomic: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGEST: gi|29665768|gb|CB662043.1|CB662043
genomic: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGEST: gi|29661446|gb|CB657721.1|CB657721
genomic: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGEST: gi|58689444|gb|CK078131.1|CK078131
genomic: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGEST: gi|29673252|gb|CB669527.1|CB669527
genomic: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGEST: gi|29628521|gb|CB633532.1|CB633532
genomic: GTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
EST: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAG GTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
genomic: GGGGCGGCTCGGGCCCCGTCGTCACGTCCACCAACCCGACGAACAACCAGgcgcgtctcc ... tgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATG
tgtgattgtggtggattttgatgggggatttttttttgggtgttttgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG
ttttgat putative branch site (score: 82)
attttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgcgtctccccccacacgatccgctcggttctaggcgctcgatttggtttgggccgccctggcatttttggggtgtgtgtgattgtggtggattttgatgggggatttttttttgggtgttttgtggtttagGTCATCGCGGAGGTCGTGGAGGCGTCCGCGCGTGAGTACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG