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...cttcaagctctctcttttctaccactcttgaaattcttaagatccttattgctttgcaaaatagcgatgaatcattcagcttatccaaatatatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCAAGCACACACTCTTCTACATCCCAGCAACACTGGTTGCATTCAACCAGG
species | Oryza sativa |
transcript | LOC_Os09g24910.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|58671036|gb|CK059722.1|CK059722
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|88582124|gb|CI699358.1|CI699358
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATCTGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|88310539|gb|CI659329.1|CI659329
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|88458300|gb|CI695684.1|CI695684
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGNGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|88405620|gb|CI588826.1|CI588826
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|14192018|gb|AU184229.1|AU184229
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: CGGCAGCCCCGCCGCAATCCGCCGCCGCGTNTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGNTTTAAAAGCEST: gi|88725022|gb|CI748281.1|CI748281
genomic: CGG-AGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|572147|gb|D41658.1|D41658
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGNCGCGTCTCGCCGGCGCAAG-TCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|88576399|gb|CI670544.1|CI670544
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|33678577|gb|CF306816.1|CF306816
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|88313392|gb|CI671505.1|CI671505
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATCTGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|66924325|gb|CX111173.1|CX111173
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|13165025|gb|AU173822.1|AU173822
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|88692759|gb|CI736334.1|CI736334
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCEST: gi|88371223|gb|CI597700.1|CI597700
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG ATTAGTGGGTCCACATATGACCTTTTCTGGAATGGACATTGTTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
ttattgctttgcaaaatagcgatgaatcattcagcttatccaaatatatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCAAGCACACACTCTTCTACATCCCAGCAACACTGGTTGCATTCAACCAGG
ttatccaaatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcaagctctctcttttctaccactcttgaaattcttaagatccttattgctttgcaaaatagcgatgaatcattcagcttatccaaatatatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCAAGCACACACTCTTCTACATCCCAGCAACACTGGTTGCATTCAACCAGG
- -caagctc
- - - - - - - - - ctaccac
- - - - - - - - - - - - -tcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atccaaa