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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttcaagctctctcttttctaccactcttgaaattcttaagatccttattgctttgcaaaatagcgatgaatcattcagcttatccaaatatatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCAAGCACACACTCTTCTACATCCCAGCAACACTGGTTGCATTCAACCAGG

Basic information

species Oryza sativa
transcript LOC_Os09g24910.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88725769|gb|CI749028.1|CI749028
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|58671036|gb|CK059722.1|CK059722
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88582124|gb|CI699358.1|CI699358
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATCTGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88458300|gb|CI695684.1|CI695684
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGNGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|14192018|gb|AU184229.1|AU184229
EST:     CGGCAGCCCCGCCGCAATCCGCCGCCGCGTNTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGNTTTAAAAGC
genomic: CGG-AGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88725022|gb|CI748281.1|CI748281
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|572147|gb|D41658.1|D41658
EST:     TCGGAGCCCCGCCGCAATCCGCCGNCGCGTCTCGCCGGCGCAAG-TCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88310539|gb|CI659329.1|CI659329
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88405620|gb|CI588826.1|CI588826
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|33678577|gb|CF306816.1|CF306816
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88313392|gb|CI671505.1|CI671505
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATCTGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|66924325|gb|CX111173.1|CX111173
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|13165025|gb|AU173822.1|AU173822
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88692759|gb|CI736334.1|CI736334
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88371223|gb|CI597700.1|CI597700
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGAATGGACATTGTTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
EST: gi|88576399|gb|CI670544.1|CI670544
EST:     TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAG                         ATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC
genomic: TCGGAGCCCCGCCGCAATCCGCCGCCGCGTCTCGCCGGCGCAAGCTCCAGgtgagatgct ... atatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgctttgcaaaatagcgatgaatcattcagcttatccaaatatatatgcagATTAGTGGGTCCACATATGACCTTTTCTGGGATGGACATTGCTTTAAAAGCAAGCACACACTCTTCTACATCCCAGCAACACTGGTTGCATTCAACCAGG
                                   ttatccaaatatatat  TA-rich tract