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...tatatatctttttactattcaactgagagttatgacatatgaactatgaataattcctgtttctgctgcaacatttgctgattgaggaacttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTTGGTGCCTCATTTTGTGAAAATAAGAAATTTCTGTGAGCTGCTTCGCAA
species | Oryza sativa |
transcript | LOC_Os09g24650.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTG AAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTEST: gi|88761989|gb|CI771545.1|CI771545
genomic: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatcc ... ttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTT
EST: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTG AAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTEST: gi|88741408|gb|CI764916.1|CI764916
genomic: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatcc ... ttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTT
EST: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTG AAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTEST: gi|88288509|gb|CI661714.1|CI661714
genomic: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatcc ... ttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTT
EST: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTG AAAGGTGGAGCTCAAATCCATTAGTGCCCCATCTATCTCGTACCAAGGACT
genomic: GCCGATCCTCAATCTCGCGACCGGAGCAGGGGAGGGGTTCCTGCATCCTGgtgagcatcc ... ttgcatgcagAAAGGTGGAGCTCAAATC-ATTAGTGCCCCATTTATCTCGTACCAAGGACT
atgaataattcctgtttctgctgcaacatttgctgattgaggaacttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTTGGTGCCTCATTTTGTGAAAATAAGAAATTTCTGTGAGCTGCTTCGCAA
tgctgat putative branch site (score: 28)
aacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatctttttactattcaactgagagttatgacatatgaactatgaataattcctgtttctgctgcaacatttgctgattgaggaacttgcatgcagAAAGGTGGAGCTCAAATCATTAGTGCCCCATTTATCTCGTACCAAGGACTTTGGTGCCTCATTTTGTGAAAATAAGAAATTTCTGTGAGCTGCTTCGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat