1 5' 3' | 2 5' 3' | 3 5' 3' |
...attaattacccttttttaccatgttttttcgctgcatttttctctcttggaattaaagttaattttgattgttattggattattttgattttaattatagGTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAG
species | Oryza sativa |
transcript | LOC_Os09g23300.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGGCCTCGCCGAGGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGG GTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAGEST: gi|117243482|gb|CT843087.1|CT843087
genomic: GCCGGCCTCGCCGAGGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGGgtaagcccaa ... ttaattatagGTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAG
EST: GCCGGCCTCGCCGAGGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGG GTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAGEST: gi|66920559|gb|CX107407.1|CX107407
genomic: GCCGGCCTCGCCGAGGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGGgtaagcccaa ... ttaattatagGTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAG
EST: GCCGGCCTCGCCGAGGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGG GTATCTAGGCGGCGAAGAGCGACGCCGACCACTACCAACGCGAGCTGCAGA
genomic: GCCGGCCTCGCCGAGGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGGgtaagcccaa ... ttaattatagGTATCT-GGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGA
cttggaattaaagttaattttgattgttattggattattttgattttaattatagGTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAG
ttttaat putative branch site (score: 6)
ttaattttgattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaattacccttttttaccatgttttttcgctgcatttttctctcttggaattaaagttaattttgattgttattggattattttgattttaattatagGTATCTGGCGGCGAAGAGCGACGCCGACCACTACCACCGCGAGCTGCAGAGGGAGCAGGAGGAGATCGACACCGTGCCGGACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - taccatg
- - - - - - - - - - - - - - -cgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgt