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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcggccgcgtccccttctcttgtgggattagagctttggtggttcttggatttgattttctttttgtttgtttgtttgtttgtttgtttgttgttgatgatgagttgtttgtttttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC

Basic information

species Oryza sativa
transcript LOC_Os09g19734.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56157245|gb|D23596.2|D23596
EST:     GGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGG                         ATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
genomic: GGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGGgtgagcggcc ... tttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
EST: gi|29634623|gb|CB639632.1|CB639632
EST:     ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGG                         ATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
genomic: ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGGgtgagcggcc ... tttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
EST: gi|33827852|gb|CF339741.1|CF339741
EST:     ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGG                         ATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
genomic: ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGGgtgagcggcc ... tttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
EST: gi|29634604|gb|CB639613.1|CB639613
EST:     ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGG                         ATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
genomic: ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGGgtgagcggcc ... tttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
EST: gi|33827932|gb|CF339781.1|CF339781
EST:     ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGG                         ATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
genomic: ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGGgtgagcggcc ... tttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
EST: gi|33794658|gb|CF323216.1|CF323216
EST:     ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGG                         ATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
genomic: ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGGgtgagcggcc ... tttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
EST: gi|33825589|gb|CF338605.1|CF338605
EST:     ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGG                         ATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT
genomic: ATGGTGGGGCCAGGCCTGTACCCGGAGATCGGCAAGAAGGCCAGGGgtgagcggcc ... tttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgtttgtttgtttgtttgttgttgatgatgagttgtttgtttttgctgcagATCTGCTGTACAGGGACTACCAGACCGACCACAAGTTCACCCTCACCACCTACACCAGCAATGGCGTC
                       tgttgat  putative branch site (score: 4)
                                       tttgttttt  putative PPT
                                       tttgttttt  TA-rich tract