1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttatttttattatagttgcattgtatccacattacatggagttgttattataactctagttactcactttgctttcttgttatgtttgttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCAAAGTGGCGAGACTTCACATGTACGACTGGATAATACTTCTACTCCTTG
species | Oryza sativa |
transcript | LOC_Os09g13870.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCEST: gi|29642303|gb|CB647310.1|CB647310
genomic: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
EST: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCEST: gi|700788|gb|D47079.1|D47079
genomic: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
EST: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCEST: gi|88454303|gb|CI569875.1|CI569875
genomic: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
EST: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCEST: gi|88407270|gb|CI583728.1|CI583728
genomic: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
EST: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCEST: gi|29640276|gb|CB645285.1|CB645285
genomic: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
EST: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCEST: gi|29642638|gb|CB647645.1|CB647645
genomic: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
EST: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCEST: gi|29671233|gb|CB667508.1|CB667508
genomic: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
EST: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCEST: gi|300215590|gb|HO088216.1|HO088216
genomic: TCGAGGAGCCGCTGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
EST: CGAGGAGCCGCTCGGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCT GACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
genomic: CGAGGAGCCGCT-GGTCGGGAAGAGGAGGAGGAGGAAGAACGGCCGCCCTgtgagttctt ... ttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACC
gttattataactctagttactcactttgctttcttgttatgtttgttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCAAAGTGGCGAGACTTCACATGTACGACTGGATAATACTTCTACTCCTTG
tactcac putative branch site (score: 20)
ttatgtttgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatttttattatagttgcattgtatccacattacatggagttgttattataactctagttactcactttgctttcttgttatgtttgttatttgaagGACACAATGGCAGATGTCTTAGGATGTTACACTATAAAGTCCCATGGAACCAAAGTGGCGAGACTTCACATGTACGACTGGATAATACTTCTACTCCTTG
- - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - -ttacatg
- - - - - - - - - - - - - - - - - - - - - gttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttg