1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taactgtcaaaattatcggaaacagaatagattgatgcccccatgctctatcaatatacatgttgtatttgacattatgctcggcttaatctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGCGGCACGCCCTTGTATCCCAGCTTGCCAACGCCTGCTAGGGTCAAGAGC
species | Oryza sativa |
transcript | LOC_Os09g10600.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGEST: gi|88718120|gb|CI741630.1|CI741630
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGEST: gi|58660187|gb|CK048867.1|CK048867
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: ACCCACCCCGCGCCGCCGCTGCCGCGT-CCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATTGCGGEST: gi|58658677|gb|CK047357.1|CK047357
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: ACCCACCCGGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGEST: gi|58683660|gb|CK072347.1|CK072347
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: ACCCACCCCGCGCCGCCGCTGGCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGEST: gi|88400623|gb|CI596044.1|CI596044
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGEST: gi|29670466|gb|CB666741.1|CB666741
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGEST: gi|58655118|gb|CK043798.1|CK043798
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: A-CCA-CCCGGGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATTGCGGEST: gi|29640101|gb|CB645110.1|CB645110
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGEST: gi|86894525|gb|CI308263.1|CI308263
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
EST: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAG CCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
genomic: ACCCACCCCGCGCCGCCGCTGCCGCGTCCCGTCCCGAATCCTCCGGCGAGgtaaccacct ... ctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGG
ctctatcaatatacatgttgtatttgacattatgctcggcttaatctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGCGGCACGCCCTTGTATCCCAGCTTGCCAACGCCTGCTAGGGTCAAGAGC
gcttaat putative branch site (score: 2)
tctcatt CT-rich tract
aatatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taactgtcaaaattatcggaaacagaatagattgatgcccccatgctctatcaatatacatgttgtatttgacattatgctcggcttaatctcattgcagCCTGACGTCGGCCGATGGGCGCATCAGTGACTACTGGCTTGCAGATGGCGGCGGCACGCCCTTGTATCCCAGCTTGCCAACGCCTGCTAGGGTCAAGAGC
- - - - - - - - - gaaacag
- - - - - - - - - - - - - - - - tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgct