Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88301209|gb|CI594735.1|CI594735EST: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAAAGGCA GCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
genomic: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCAgtacgcctcc ... tccgtcgcagGCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
EST:
gi|88696416|gb|CI739991.1|CI739991EST: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCA GCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
genomic: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCAgtacgcctcc ... tccgtcgcagGCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
EST:
gi|29631119|gb|CB636128.1|CB636128EST: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCA GCGGGAATAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCAGCTCCCGCG
genomic: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCAgtacgcctcc ... tccgtcgcagGCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
EST:
gi|88402682|gb|CI598909.1|CI598909EST: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGGG GCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGGG
genomic: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCAgtacgcctcc ... tccgtcgcagGCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
EST:
gi|88720097|gb|CI745187.1|CI745187EST: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCA GCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
genomic: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCAgtacgcctcc ... tccgtcgcagGCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
EST:
gi|58599910|gb|CK010438.1|CK010438EST: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCA GCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
genomic: CCACATCGAGCTCGGCCAACACGTCAACTTCATCACCGGCCAGAACGGCAgtacgcctcc ... tccgtcgcagGCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctcttttcctcccctctcgatcgatccgtgccttatcatttctctccgtcgcagGCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCGCCAAGAGCACCCAGCGCGCCGCCGCCCTCAAGGACTTCATCAAGACCGA
ccttatcatttctctc CT-rich tract
ttatcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgcctcccctccctcccgcaaaccctagcctcctcttttcctcccctctcgatcgatccgtgccttatcatttctctccgtcgcagGCGGGAAGAGCGCCGTCCTGACGGCGCTGTGTATCGCTTTCGGCTCCCGCGCCAAGAGCACCCAGCGCGCCGCCGCCCTCAAGGACTTCATCAAGACCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA