1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtaatttttctcagctaacggaagtgacgcatactagacagtactaaagttgtccagaacacggtagtaatgccttttatattcatttggccgtttgcagGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATTCATGAGCATGAGAATGAC
species | Oryza sativa |
transcript | LOC_Os08g44930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCTTCTTCGTTGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAG GGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCEST: gi|427716|gb|D23851.1|D23851
genomic: CCCCTTCTTCGTTGGCCGGGACTCTTCCTTCCCCCCATGAACTCTAGGAGgtcagtctcc ... ccgtttgcagGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGC
EST: CTCTTCCTTCCCCCCATGAACTCTAGGAG GGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGC
genomic: CTCTTCCTTCCCCCCATGAACTCTAGGAGgtcagtctcc ... ccgtttgcagGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGC
aaagttgtccagaacacggtagtaatgccttttatattcatttggccgtttgcagGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATTCATGAGCATGAGAATGAC
tactaaa putative branch site (score: 1)
ttttatattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttttctcagctaacggaagtgacgcatactagacagtactaaagttgtccagaacacggtagtaatgccttttatattcatttggccgtttgcagGGACTTCCGCAGCCACAGAGCTGCTTTATTTGATGGTATTGAGGAGGGTGCGATCAGAAGTTCAGCTTACTCTTCTCAAATTCATGAGCATGAGAATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatttg