1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgtaggcatgtttactgccgctacggcctcaatttgttgattattctgctgctgataatgcgatgccatgatgctgattttgagacctatatgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGAACGGGGCTCAGTACGGAGCTCCTTTTGTTGAGGAGGAGTGGGAGGAGG
species | Oryza sativa |
transcript | LOC_Os08g44820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|58691437|gb|CK080124.1|CK080124
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|29660833|gb|CB657108.1|CB657108
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|58672969|gb|CK061655.1|CK061655
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCEST: gi|29661739|gb|CB658014.1|CB658014
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGC
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|29621761|gb|CB626772.1|CB626772
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|117210558|gb|CT863552.1|CT863552
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|29676092|gb|CB672367.1|CB672367
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|29638320|gb|CB643329.1|CB643329
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGAATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|29621891|gb|CB626902.1|CB626902
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|88419397|gb|CI599230.1|CI599230
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTAATGCACGAGTACCGCCTCGACG-C-AAACCACCATCCCACCA-AG GATT-ATTC-TCGTGTGC-GTATEST: gi|29625979|gb|CB630990.1|CB630990
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTAT
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGEST: gi|58665423|gb|CK054109.1|CK054109
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
EST: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAG GATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
genomic: GGGTCATGCACGAGTACCGCCTCGACGGCCAAACCACCATCCCACCACAGgtccccccat ... atgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAG
ctgctgctgataatgcgatgccatgatgctgattttgagacctatatgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGAACGGGGCTCAGTACGGAGCTCCTTTTGTTGAGGAGGAGTGGGAGGAGG
tgctgat putative branch site (score: 3)
tgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtaggcatgtttactgccgctacggcctcaatttgttgattattctgctgctgataatgcgatgccatgatgctgattttgagacctatatgtgtacagGATTCATTCGTCGTGTGCCGTATCTTCCAGAAAGCCGGCCCAGGTCCACAGAACGGGGCTCAGTACGGAGCTCCTTTTGTTGAGGAGGAGTGGGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG