1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagattatgtctgaatataggttactgatcggtataagaaatgctcgttctttgtttcctgaacaaaattcacgtgctgagcttgcgtgatcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAATCCAAGGAGAAGGGCAGGAAGTTCACCGAGACCGTTGAGCTTCAGATT
species | Oryza sativa |
transcript | LOC_Os08g44450.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGTTTCGCTCCCTGACCCT---CCGCCGCCGCCGCCGATCATCGTGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|218501569|gb|FG968626.1|FG968626
genomic: GCCGTTTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCCGTTTCGCTCCCTGACCCT---CCGCCGCCGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|58604026|gb|CK014554.1|CK014554
genomic: GCCGTTTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCCGTTTCGCTCCCTGACCCT---CCGCCGCCGCCGCCGATCATCATGAG TAAG-TGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|58679944|gb|CK068631.1|CK068631
genomic: GCCGTTTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCCGTTTCGCTCCCTGA-CCT---CCGCCG-CGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|27554288|gb|CA998188.1|CA998188
genomic: GCCGTTTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: ATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|38474392|gb|CF958524.1|CF958524
genomic: ATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCCGTTTCGCTCCCTGACCCT---CCGCCGCCGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|218502837|gb|FG950277.1|FG950277
genomic: GCCGTTTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: TTCGCTCCCTGACCCT---CCGCCGCCGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|29687000|gb|CB683275.1|CB683275
genomic: TTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: ATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|38483017|gb|CF966819.1|CF966819
genomic: ATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCCGTTTCGCTCCCTGACCCT---CCGCCGCCGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|27577252|gb|CA999946.1|CA999946
genomic: GCCGTTTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: ATCATCATGAG CEST: gi|27577252|gb|CA999946.1|CA999946
genomic: ATCATCATGAGgtgattcccg ... tcaattgcag-
EST: ATCATCATGAG CEST: gi|33811047|gb|CF331414.1|CF331414
genomic: ATCATCATGAGgtgattcccg ... tcaattgcag-
EST: ATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|58588784|gb|CF987092.1|CF987092
genomic: ATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: CCGCCGCCGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAGGGGAAGCCATCTCCCAGGTTGTTGGGGEST: gi|27554610|gb|CA998510.1|CA998510
genomic: CCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCA-AGGAAGCCATCTCCCAGGTTGTTGGGG
EST: ATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|218497208|gb|FG946438.1|FG946438
genomic: ATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCCGTTTCGCTCCCTGACCCT---CCGCCGCCGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTC-AGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|33823303|gb|CF337452.1|CF337452
genomic: GCCGTTTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCCGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|29637359|gb|CB642368.1|CB642368
genomic: GCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: ATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|58595844|gb|CK006372.1|CK006372
genomic: ATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCTCCCTGACCCT---CCGCCGCCGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAEST: gi|58694951|gb|CK083638.1|CK083638
genomic: GCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
EST: GCCGTTTCGCTCCCTGACCCT---CCGCCG-CGCCGCCGATCATCATGAG TAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
genomic: GCCGTTTCGCTCCCTGACCCTCCGCCGCCGCCGCCGCCGATCATCATGAGgtgattcccg ... tcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGA
cgttctttgtttcctgaacaaaattcacgtgctgagcttgcgtgatcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAATCCAAGGAGAAGGGCAGGAAGTTCACCGAGACCGTTGAGCTTCAGATT
aacaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagattatgtctgaatataggttactgatcggtataagaaatgctcgttctttgtttcctgaacaaaattcacgtgctgagcttgcgtgatcaattgcagTAAGTTGCAGAGCGAGGTTCTCAAGGAAGCCATCTCCCAGGTTGTTGGGGAATCCAAGGAGAAGGGCAGGAAGTTCACCGAGACCGTTGAGCTTCAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT