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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtgttgcactagtaccccttcctacctgctccccacgcttatcccgatctaatttgtcttgctctgtgcattccgagtgcagCTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATTTCGCGCGTTCCGATAAGC

Basic information

species Oryza sativa
transcript LOC_Os08g44015.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88335878|gb|CI645479.1|CI645479
EST:     ATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTG                         CTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATT
genomic: ATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTGgtggtgttgc ... ccgagtgcagCTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATT
EST: gi|88307381|gb|CI642026.1|CI642026
EST:     ATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTG                         CTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATT
genomic: ATCACCCGGCCCTCGCTTCCTCTCGCCGCCGCTCCCCTCATGCCCCCCTGgtggtgttgc ... ccgagtgcagCTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctccccacgcttatcccgatctaatttgtcttgctctgtgcattccgagtgcagCTGAACAGCTCCGGCGGCGGAAGCACGGTGGTGTCCGAGCACAGCGAGATTTCGCGCGTTCCGATAAGC
                   atctaat  putative branch site (score: 3)
                   atctaattt  TA-rich tract