1 5' 3' | 2 5' 3' |
gtaaatccttcaacccgccccctccccttcgccggatctcacccgcggatcgatctcccccccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCGGGGCTCAAGGCGGACGCCCGCGTGCTCATCAACCGGGCGCGCGTCGAG
species | Oryza sativa |
transcript | LOC_Os08g43540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88365468|gb|CI680107.1|CI680107
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCANATCGCGCTTGCCTGCGCEST: gi|29656751|gb|CB653026.1|CB653026
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|86902230|gb|CI302261.1|CI302261
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88337546|gb|CI630843.1|CI630843
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGGCTGCGCEST: gi|88333865|gb|CI645279.1|CI645279
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88324140|gb|CI563751.1|CI563751
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88347404|gb|CI632689.1|CI632689
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88347092|gb|CI631172.1|CI631172
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88345884|gb|CI632357.1|CI632357
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCAAG GTNCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88337530|gb|CI630827.1|CI630827
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|86829834|gb|CI288530.1|CI288530
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88359566|gb|CI621097.1|CI621097
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88352815|gb|CI678840.1|CI678840
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|33657667|gb|CF280281.1|CF280281
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|218492192|gb|FG944278.1|FG944278
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|33654965|gb|CF277579.1|CF277579
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88310630|gb|CI672491.1|CI672491
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88591190|gb|CI708110.1|CI708110
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|33823569|gb|CF337591.1|CF337591
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCTTGCGCEST: gi|88587724|gb|CI704436.1|CI704436
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88382313|gb|CI633171.1|CI633171
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGNGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|33657346|gb|CF279960.1|CF279960
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88375459|gb|CI681232.1|CI681232
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|325493448|gb|JG457972.1|JG457972
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|86829884|gb|CI288566.1|CI288566
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88410402|gb|CI686331.1|CI686331
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88571299|gb|CI662672.1|CI662672
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGATCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|86906661|gb|CI291140.1|CI291140
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCEST: gi|33805153|gb|CF328454.1|CF328454
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|87012256|gb|CI293306.1|CI293306
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCAGCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGAEST: gi|88347730|gb|CI655083.1|CI655083
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGA
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|88337689|gb|CI632191.1|CI632191
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCAAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCEST: gi|33665451|gb|CF296418.1|CF296418
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGC
EST: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAG GTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCG
genomic: GTCGTCCTCGGCGTCGAGAAGAAATCCACCCCCAAGCTCCAGGACTCCAGgtaaatcctt ... ccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCG
gccccctccccttcgccggatctcacccgcggatcgatctcccccccaaatccagGTCCATGCGCAAGATCGCCAGCCTCGACACCCACATCGCGCTTGCCTGCGCGGGGCTCAAGGCGGACGCCCGCGTGCTCATCAACCGGGCGCGCGTCGAG
atctcac putative branch site (score: 43)
tcgatctccccccc putative PPT