1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catactgttctgtaatacgcctgtgcagtttatttattttgatagtgttaagaacaaggggggttcttagtgctaacaagttgtttgctccattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAAGCATGGCGTCTCATTAGCTGTATCTGGCTACATGCTGGCCTAATCCAC
species | Oryza sativa |
transcript | LOC_Os08g43320.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|88326225|gb|CI660038.1|CI660038
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|88585749|gb|CI701489.1|CI701489
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|87024401|gb|CI289931.1|CI289931
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAEST: gi|88573253|gb|CI664824.1|CI664824
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|88310401|gb|CI659191.1|CI659191
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|88579260|gb|CI688240.1|CI688240
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|86906974|gb|CI292689.1|CI292689
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGEST: gi|86908498|gb|CI291873.1|CI291873
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAG
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|88584923|gb|CI702512.1|CI702512
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|88584460|gb|CI702015.1|CI702015
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|29659845|gb|CB656120.1|CB656120
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|86905027|gb|CI289174.1|CI289174
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGEST: gi|33817180|gb|CF334425.1|CF334425
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAG
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|88468817|gb|CI696816.1|CI696816
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|29655821|gb|CB652096.1|CB652096
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAEST: gi|88341472|gb|CI635670.1|CI635670
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
EST: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCAC TTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
genomic: GCCTTCCAGCCGCTCCGGGAGAACCCGCTCCTCGGGCCCTCCTCCGCCACgtacgtaacg ... cattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCA
tgttaagaacaaggggggttcttagtgctaacaagttgtttgctccattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAAGCATGGCGTCTCATTAGCTGTATCTGGCTACATGCTGGCCTAATCCAC
tgctaac putative branch site (score: 12)
tttgctcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catactgttctgtaatacgcctgtgcagtttatttattttgatagtgttaagaacaaggggggttcttagtgctaacaagttgtttgctccattggccagTTTGGAGAAGATGGGAGCACTAGACTGGGCGAAGGTTGTTCATCAGCACCAAGCATGGCGTCTCATTAGCTGTATCTGGCTACATGCTGGCCTAATCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -tgttctg
- - - - - - - - - -cctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - -gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagtgct