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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatagcggattgatttatagatcagatttaccctgtcattagtgtttatcttagaatttgtgtaactgaatcggactgaacctttcttctatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG

Basic information

species Oryza sativa
transcript LOC_Os08g41390.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88734887|gb|CI758395.1|CI758395
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGA
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGA
EST: gi|88730699|gb|CI754312.1|CI754312
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58672709|gb|CK061395.1|CK061395
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|8858040|gb|AU095358.1|AU095358
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88316943|gb|CI625580.1|CI625580
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAACAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58655964|gb|CK044644.1|CK044644
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88731713|gb|CI753433.1|CI753433
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|8858050|gb|AU095368.1|AU095368
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88741368|gb|CI764876.1|CI764876
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88729375|gb|CI752885.1|CI752885
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88695375|gb|CI737878.1|CI737878
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGT
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGT
EST: gi|88724094|gb|CI749104.1|CI749104
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58690253|gb|CK078940.1|CK078940
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88357032|gb|CI620920.1|CI620920
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGAGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58596457|gb|CK006985.1|CK006985
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88394593|gb|CI605934.1|CI605934
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58690739|gb|CK079426.1|CK079426
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88409713|gb|CI569003.1|CI569003
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACCACTGGCACACTGCCTTGATGGAAAGAAGTTTGATTCAAGCCG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTAC-ACTGGCACACTGC-TTGATGGAAAGAAGTTTGATTCAAGCCG
EST: gi|88694729|gb|CI738767.1|CI738767
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88361507|gb|CI605288.1|CI605288
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|1631494|gb|C19223.1|C19223
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58665256|gb|CK053942.1|CK053942
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88720790|gb|CI744089.1|CI744089
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTC
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTC
EST: gi|88720516|gb|CI743815.1|CI743815
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58675334|gb|CK064021.1|CK064021
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58694438|gb|CK083125.1|CK083125
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88394916|gb|CI607643.1|CI607643
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58687081|gb|CK075768.1|CK075768
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88401928|gb|CI593640.1|CI593640
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TAAACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88324708|gb|CI626913.1|CI626913
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58675080|gb|CK063767.1|CK063767
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88387790|gb|CI587878.1|CI587878
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88395544|gb|CI613066.1|CI613066
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88421837|gb|CI611716.1|CI611716
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|218492631|gb|FG962246.1|FG962246
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58667007|gb|CK055693.1|CK055693
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|29624443|gb|CB629454.1|CB629454
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88343363|gb|CI621731.1|CI621731
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58608921|gb|CK036954.1|CK036954
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88731657|gb|CI755270.1|CI755270
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88400878|gb|CI616883.1|CI616883
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88396766|gb|CI620099.1|CI620099
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58668442|gb|CK057128.1|CK057128
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88695597|gb|CI737635.1|CI737635
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGG
EST: gi|88396999|gb|CI578148.1|CI578148
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACAATACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58670205|gb|CK058891.1|CK058891
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88718683|gb|CI742193.1|CI742193
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCG
EST: gi|88405608|gb|CI588814.1|CI588814
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58683729|gb|CK072416.1|CK072416
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58682636|gb|CK071323.1|CK071323
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88377110|gb|CI597894.1|CI597894
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88358456|gb|CI608356.1|CI608356
EST:     CAAGGAGGGCGAGGGGTGGGGGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACCTGCTTGATGGAAAGAAGTTTGATTCAAGCCGT
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACAC-TGCTTGATGGAAAGAAGTTTGATTCAAGCCGT
EST: gi|29675035|gb|CB671310.1|CB671310
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88324580|gb|CI568199.1|CI568199
EST:     CAAGGAGGGCGAGGGGTGGGAGAACCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|33380928|gb|CF196271.1|CF196271
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88718880|gb|CI742390.1|CI742390
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|29666721|gb|CB662996.1|CB662996
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|29626371|gb|CB631382.1|CB631382
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88422798|gb|CI573960.1|CI573960
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGAATTCAAGCCGT
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGA-TTCAAGCCGT
EST: gi|88731665|gb|CI755278.1|CI755278
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88825009|gb|CI775574.1|CI775574
EST:     CAAGGAGGGCGAGGGGTGGGACACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58608216|gb|CK036249.1|CK036249
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88738311|gb|CI761819.1|CI761819
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58610628|gb|CK038340.1|CK038340
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88735681|gb|CI759189.1|CI759189
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88431755|gb|CI579724.1|CI579724
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTAAACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|58665497|gb|CK054183.1|CK054183
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|88371148|gb|CI597625.1|CI597625
EST:     CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGGTGGGAGACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
EST: gi|29628610|gb|CB633621.1|CB633621
EST:     GACCCCCGAGGTCGGCTACGAGGTCGAAG                         TACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG
genomic: GACCCCCGAGGTCGGCGACGAGGTCGAAGgtattgcgtg ... tatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcttagaatttgtgtaactgaatcggactgaacctttcttctatgtttcagTACACTACACTGGCACACTGCTTGATGGAAAGAAGTTTGATTCAAGCCGTGACCGTGGGACACCCTTCAAGTTTAAGTTGGGACAAG
               gtgtaac  putative branch site (score: 3)
                                    cctttcttctatgttt  putative PPT
      ttagaattt  TA-rich tract