1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacgcgcatctccgctgctccttcagatctgatcgtcttcttccagcccacgcgctccgctcgccgcttgctcacccccacctccgtcgcctcgtttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAGGTGGATCCGGCAGCAGCCTCCCGAGCAGGTTTACGTCGCCGTCGCGGT
species | Oryza sativa |
transcript | LOC_Os08g41250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|86876691|gb|CI309609.1|CI309609
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|86901909|gb|CI298556.1|CI298556
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88331532|gb|CI675870.1|CI675870
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|33655897|gb|CF278511.1|CF278511
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88740026|gb|CI763534.1|CI763534
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88380774|gb|CI634799.1|CI634799
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88760646|gb|CI770202.1|CI770202
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88348367|gb|CI639026.1|CI639026
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88761710|gb|CI771266.1|CI771266
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88826610|gb|CI777175.1|CI777175
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88314889|gb|CI608348.1|CI608348
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|88410181|gb|CI575779.1|CI575779
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAEST: gi|396941163|gb|HO188372.1|HO188372
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
EST: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAG GGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
genomic: GCGCAGGCCTGCGCCGTCGTCCTGCTCTGGGAACTTCCGCGTGCAGCGAGgtaacgcgca ... tttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGA
acgcgctccgctcgccgcttgctcacccccacctccgtcgcctcgtttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAGGTGGATCCGGCAGCAGCCTCCCGAGCAGGTTTACGTCGCCGTCGCGGT
tgctcac putative branch site (score: 80)
cctcgtttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgcgcatctccgctgctccttcagatctgatcgtcttcttccagcccacgcgctccgctcgccgcttgctcacccccacctccgtcgcctcgtttcgtgcagGGATGGACGAGTGGGTTCGCCAGGCCGAGGTGTGGGTGGGACAAGCCGAGAGGTGGATCCGGCAGCAGCCTCCCGAGCAGGTTTACGTCGCCGTCGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCGTCG