1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatccatccggctacgaccgcttcagatctggatcaggggttcttcttcttgtttttttttcccgtgcacgcggggtgtttgtgtgaatgcctcgtccgtgtttgtctggttcgatgggggtgattgatgggggatgcgcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACCGCAAGA
species | Oryza sativa |
transcript | LOC_Os08g40170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|29663133|gb|CB659408.1|CB659408
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|58604316|gb|CK014844.1|CK014844
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|58684825|gb|CK073512.1|CK073512
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|29663132|gb|CB659407.1|CB659407
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|58676453|gb|CK065140.1|CK065140
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|58678707|gb|CK067394.1|CK067394
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTAGCTTTCTGCCATGGCCGCGGTEST: gi|58657532|gb|CK046212.1|CK046212
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGGGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTEST: gi|58600858|gb|CK011386.1|CK011386
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCT
EST: CCGGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCEST: gi|58677365|gb|CK066052.1|CK066052
genomic: CCG-CGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTC
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|58597617|gb|CK008145.1|CK008145
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCCCATGGCCGCGEST: gi|3768776|gb|AU032803.1|AU032803
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCC--ATGGCCGCG
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|33801903|gb|CF326823.1|CF326823
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|58603691|gb|CK014219.1|CK014219
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTEST: gi|38479047|gb|CF963180.1|CF963180
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
EST: TCGGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAG ATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
genomic: TCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGgtatccatcc ... gcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGT
cgtccgtgtttgtctggttcgatgggggtgattgatgggggatgcgcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACCGCAAGA
gattgat putative branch site (score: 14)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccatccggctacgaccgcttcagatctggatcaggggttcttcttcttgtttttttttcccgtgcacgcggggtgtttgtgtgaatgcctcgtccgtgtttgtctggttcgatgggggtgattgatgggggatgcgcttgtgcagATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACCGCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
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