Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcagaaggttatattaggcaggagtttttattgctgtgggacgaataattattttttgtttgggcctgatgggcctttgtgtgtgtgtgtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAG

Basic information

species Oryza sativa
transcript LOC_Os08g39300.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g39300.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G137868_T03 (Zea mays), 3'ss of exon 1
-----------------------------------------------------------------------------------------------------tttcagaaggttatattaggcaggagtttttattgct-------gtgggacgaataattattttttgtttgggcctgatgggcctttgtgtgtgtgtgtgtgggcagG----------GAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAG
                                                                                                        |  |||     || || |  ||| |||  ||||        |||            | |   |  |    |    ||  |   ||   ||    |       | |            ||||||||||||||||||||| || ||||||| ||||||||||||||| || || ||||||||||||||||  |||||                   
gtacgcctgtctccggtccagtgcaatcttgtcttctttttggatttgtgatcgacgatgatgtagtatgtagcaaagtgtttgcttggcatgtgggctcaaggcgtaagtaaggatcagtctagaggtttggttgccaagttcagtgcactacgctgacactccctcctctccctgcgtgcactgctgctagtaccagCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCCCCGGGCGGACCCACCTGTTCGTGCCGGGCCCCGTGAACATCCCGGACCCCGTGAT-------------------

upper sequence: LOC_Os08g39300.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G137868_T05 (Zea mays), 3'ss of exon 1
-----------------------------------------------------------------------------------------------------tttcagaaggttatattaggcaggagtttttattgct-------gtgggacgaataattattttttgtttgggcctgatgggcctttgtgtgtgtgtgtgtgggcagG----------GAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAG
                                                                                                        |  |||     || || |  ||| |||  ||||        |||            | |   |  |    |    ||  |   ||   ||    |       | |            ||||||||||||||||||||| || ||||||| ||||||||||||||| || || ||||||||||||||||                          
gtacgcctgtctccggtccagtgcaatcttgtcttctttttggatttgtgatcgacgatgatgtagtatgtagcaaagtgtttgcttggcatgtgggctcaaggcgtaagtaaggatcagtctagaggtttggttgccaagttcagtgcactacgctgacactccctcctctccctgcgtgcactgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCCCCGGGCGGACCCACCTGTTCGTGCCGGGCCCCGTGAACATCCCGGACCC-------------------------

upper sequence: LOC_Os08g39300.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G137868_T04 (Zea mays), 3'ss of exon 1
tttcagaaggttatattaggcaggagtttttattgct-------gtgggacgaataattattttttgtttgggcctgatgggcctttgtgtgtgtgtgtgtgggcagG----------GAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAG
   |  |||     || || |  ||| |||  ||||        |||            | |   |  |    |    ||  |   ||   ||    |       | |            ||||||||||||||||||||| || ||||||| ||||||||||||||| || || ||||||||||||||||  ||||||||                
-ggcgtaagtaaggatcagtctagaggtttggttgccaagttcagtgcactacgctgacactccctcctctccctgcgtgcactgctgctagtaccagcagCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCCCCGGGCGGACCCACCTGTTCGTGCCGGGCCCCGTGAACATCCCGGACCCCGTGATCCG----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88761628|gb|CI771184.1|CI771184
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88735880|gb|CI757455.1|CI757455
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88583206|gb|CI700673.1|CI700673
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88454227|gb|CI567832.1|CI567832
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88336338|gb|CI648925.1|CI648925
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88689671|gb|CI733247.1|CI733247
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88577236|gb|CI673798.1|CI673798
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88377300|gb|CI600455.1|CI600455
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88312149|gb|CI580314.1|CI580314
EST:     TCATAAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88342369|gb|CI645891.1|CI645891
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88367219|gb|CI563983.1|CI563983
EST:     CGNNNNNNNNNNTCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: CGAAAAAAAAAATCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88904422|gb|CI711730.1|CI711730
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|33666875|gb|CF297842.1|CF297842
EST:     CAGCACAAGATCGAGGAGGCTTTATCTGAAC-AG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: CAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88372697|gb|CI612625.1|CI612625
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88405121|gb|CI685572.1|CI685572
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88335296|gb|CI650261.1|CI650261
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88593776|gb|CI713730.1|CI713730
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88672115|gb|CI726231.1|CI726231
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|58608520|gb|CK036553.1|CK036553
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88674467|gb|CI728580.1|CI728580
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88454252|gb|CI567857.1|CI567857
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29657961|gb|CB654236.1|CB654236
EST:     TCATCCGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88670462|gb|CI724578.1|CI724578
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88421062|gb|CI566903.1|CI566903
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88412762|gb|CI576026.1|CI576026
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88331460|gb|CI675795.1|CI675795
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88575471|gb|CI669616.1|CI669616
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88827365|gb|CI777930.1|CI777930
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88668397|gb|CI721959.1|CI721959
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88370080|gb|CI585085.1|CI585085
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88827354|gb|CI777919.1|CI777919
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88571667|gb|CI663040.1|CI663040
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29660238|gb|CB656513.1|CB656513
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88400944|gb|CI684918.1|CI684918
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88672213|gb|CI726329.1|CI726329
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29644601|gb|CB649608.1|CB649608
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29688813|gb|CB685088.1|CB685088
EST:     TCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|4714639|gb|AU055756.1|AU055756
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88690549|gb|CI734628.1|CI734628
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29638362|gb|CB643371.1|CB643371
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88673721|gb|CI727834.1|CI727834
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29675972|gb|CB672247.1|CB672247
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACCCCTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88426441|gb|CI576683.1|CI576683
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88436428|gb|CI691143.1|CI691143
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|11564952|gb|AU165588.1|AU165588
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88576971|gb|CI673517.1|CI673517
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88581422|gb|CI698408.1|CI698408
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29678036|gb|CB674311.1|CB674311
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88340971|gb|CI638527.1|CI638527
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88904352|gb|CI711660.1|CI711660
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|38471361|gb|CF955492.1|CF955492
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88738337|gb|CI761845.1|CI761845
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|33664331|gb|CF295298.1|CF295298
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCTGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29638669|gb|CB643678.1|CB643678
EST:     TCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29678170|gb|CB674445.1|CB674445
EST:     CGACATAAAAAATCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: CGAAAAAAAAAATCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88391938|gb|CI683757.1|CI683757
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88444649|gb|CI694883.1|CI694883
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29643551|gb|CB648558.1|CB648558
EST:     AAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: AAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88338623|gb|CI644080.1|CI644080
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88688525|gb|CI732101.1|CI732101
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29679264|gb|CB675539.1|CB675539
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88691411|gb|CI733489.1|CI733489
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29668635|gb|CB664910.1|CB664910
EST:     TCATCAACACATTATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|29664278|gb|CB660553.1|CB660553
EST:     TCATCAGCACAAGATCGCCTAGGATTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88343122|gb|CI641648.1|CI641648
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88973668|gb|CI718096.1|CI718096
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88436461|gb|CI691178.1|CI691178
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88329058|gb|CI658713.1|CI658713
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
EST: gi|88416944|gb|CI573659.1|CI573659
EST:     TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAG                         GGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC
genomic: TCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 75 (downstream exon)
Score: 109

TCCCTGCCTCCTCCTTCGCACGTATTACGTGCGAAAAAAAAAATCATCAGCACAAGATCGAGGAGGCTTTATCTGAACAAGgtacacacat ... gtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataattattttttgtttgggcctgatgggcctttgtgtgtgtgtgtgtgggcagGGAGATGGCGGACTACGTGTATGGGCCGGGGCGGAACCACCTGTTCGTGCCTGGGCCGGTGAACATCCCGGACCAGGTGATCCGCGCCATGAGCCGTCAG
                    gcctgat  putative branch site (score: 109)
     ttattttttgttt  TA-rich tract