1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacacactcacttgctccccgtctcatcgcatcgatcaaaacattcttaataaaaagcttgatgaatcgtttgcacaattgcttgcaccggcatttgcaagATTGCTGGAACGGATCACGCGAACGCATCGAACGCGCTTGCCGATTCTGGGAACGAGACCGAGTGTAGCAAAGATGTCAACGGCGAAGTGATCGGCCCGC
species | Oryza sativa |
transcript | LOC_Os08g38080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCGGCCGGTGACTGCTCGTCGGAGTCCAAGAAGAGGAGATCAGACGAG ATTGCTGGAACGGATCACGCGAACGCATCGAACGCGCTTGCCGATTCTGGGEST: gi|58669834|gb|CK058520.1|CK058520
genomic: AGCCGGCCGGTGACTGCTCGTCGGAGTCCAAGAAGAGGAGATCAGACGAGgtacacactc ... catttgcaagATTGCTGGAACGGATCACGCGAACGCATCGAACGCGCTTGCCGATTCTGGG
EST: AGCCGGCCGGTGACTGCTCGTCGGAGTCCAAGAAGAGGAGATCAGACGAG ATTGCTGGAACGGATCACGCGAACGCATCGAACGCGCTTGCCGATTCTGGG
genomic: AGCCGGCCGGTGACTGCTCGTCGGAGTCCAAGAAGAGGAGATCAGACGAGgtacacactc ... catttgcaagATTGCTGGAACGGATCACGCGAACGCATCGAACGCGCTTGCCGATTCTGGG
ttaataaaaagcttgatgaatcgtttgcacaattgcttgcaccggcatttgcaagATTGCTGGAACGGATCACGCGAACGCATCGAACGCGCTTGCCGATTCTGGGAACGAGACCGAGTGTAGCAAAGATGTCAACGGCGAAGTGATCGGCCCGC
aaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacactcacttgctccccgtctcatcgcatcgatcaaaacattcttaataaaaagcttgatgaatcgtttgcacaattgcttgcaccggcatttgcaagATTGCTGGAACGGATCACGCGAACGCATCGAACGCGCTTGCCGATTCTGGGAACGAGACCGAGTGTAGCAAAGATGTCAACGGCGAAGTGATCGGCCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG