Sequence
atgc intronic sequence ATGC exonic sequencegtacgcactcctccccctcttcgaacccccttctccttggtgtcgtactaccaaaccctaactcctcctcctcctgctccgctcgtctcagGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATG
Basic information
species | Oryza sativa |
transcript | LOC_Os08g37480.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os08g37480.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G153766_T01 (Zea mays), 3'ss of exon 1
gtacgcactcctccccctcttcgaacccccttctccttggtgtcgtactaccaaaccctaactcctcctcctcctgctccgctcgtctcagGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATG
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gtatgtccgtgcgcctccgttc--accctcgaatctggcagcctgaagcactccgcactaaccctagctcggaatgccatgg-----ttagGTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATGCGCGCCGCCCGCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5455511|gb|AU075677.1|AU075677EST: ACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGC GTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATG
genomic: ACGTCTCCAGCCTCGTTGACAACTTCGCCGCCCTCATCAACATCGCGCGCgtacgcactc ... ctcgtctcagGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtgtcgtactaccaaaccctaactcctcctcctcctgctccgctcgtctcagGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATG
ccctaac putative branch site (score: 2)
ccctaactcctcctcc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtacgcactcctccccctcttcgaacccccttctccttggtgtcgtactaccaaaccctaactcctcctcctcctgctccgctcgtctcagGTCAACGACCCGCCGGTGCGCAACACGCAGGAGGCCTTCCAGATGGACATGCGCGGCTCCCGCATG
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