1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tatatttgatttgcacttataaatgattgatgcttgctgttttttttttgtttttactgaagaaacacgttgttaattaattagttaattgttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGACACTATAGTTAGGGGCTTAGAGTAACCTGGTTACAGATAATGTCTGAG
species | Oryza sativa |
transcript | LOC_Os08g36994.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88393317|gb|CI618205.1|CI618205
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: NNNNCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|58612036|gb|CK039748.1|CK039748
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88441824|gb|CI597113.1|CI597113
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACGATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88453289|gb|CI565731.1|CI565731
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88420765|gb|CI564601.1|CI564601
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: GCGGGCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88315677|gb|CI615549.1|CI615549
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: GCGGCCGGGGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|117227378|gb|CT846566.1|CT846566
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCC-----G------- ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|86849717|gb|CI301619.1|CI301619
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGEST: gi|88298796|gb|CI565993.1|CI565993
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
EST: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCC ATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
genomic: GCGGCCGGCGACCTGCTGCTTCTGCCGAATTCTCTCCGGTGAGCATCCCCgtacgtacgc ... gttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAG
ttttgtttttactgaagaaacacgttgttaattaattagttaattgttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGACACTATAGTTAGGGGCTTAGAGTAACCTGGTTACAGATAATGTCTGAG
ttgttaattaattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatttgatttgcacttataaatgattgatgcttgctgttttttttttgtttttactgaagaaacacgttgttaattaattagttaattgttattgcagATTTGCAGGCCAAAGGCCTGATACAATTACCAAACAGAGGCTGTTTTGAAGACACTATAGTTAGGGGCTTAGAGTAACCTGGTTACAGATAATGTCTGAG
- - - - - -tgcactt
- - - - - - - - - - - atgattg
- - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgtta