1 5' 3' | 2 5' 3' | 3 5' 3' |
...cacaacggataatcccaaaatatttatcggtaaagggaatcttgattcgcatgtttatatgttgctttgacactgaaatttgctccattgtgattactagGCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAACATGGAATTGCAGAAGAAACAG
species | Oryza sativa |
transcript | LOC_Os08g36790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAG GCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAACEST: gi|56157703|gb|C25467.2|C25467
genomic: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAGgtcatacctc ... tgattactagGCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAAC
EST: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAG GCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAACEST: gi|109712388|gb|CI104996.1|CI104996
genomic: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAGgtcatacctc ... tgattactagGCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAAC
EST: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAG GCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAACEST: gi|86502655|gb|CI145288.1|CI145288
genomic: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAGgtcatacctc ... tgattactagGCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAAC
EST: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAG GCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAACEST: gi|88353911|gb|CI634702.1|CI634702
genomic: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAGgtcatacctc ... tgattactagGCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAAC
EST: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAG GCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAAC
genomic: GGATGATCAAGAACAGGGAGTCAGCAGCTAGATCTCGTGCCCGGAAGCAGgtcatacctc ... tgattactagGCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAAC
ttcgcatgtttatatgttgctttgacactgaaatttgctccattgtgattactagGCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAACATGGAATTGCAGAAGAAACAG
ctttgac putative branch site (score: 40)
atgtttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaacggataatcccaaaatatttatcggtaaagggaatcttgattcgcatgtttatatgttgctttgacactgaaatttgctccattgtgattactagGCTTACACAATGGAGTTGGAAGCTGAAGTTCAGAAACTCAAGGAACAGAACATGGAATTGCAGAAGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - -cccaaaa
- - - - - - - - - - - - - - - -aaagggaa
- - - - - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct