1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgctatacctttggagactttgggggtggcagtgcttaacctcctgtgatggtttattacattttggtcattttgttgattgttggggttgatttggtttggttagGTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCTATGGCACTTGCGCAGCACCCGGTGGTGAATGCTAGCTGCAGGGATGGGA
species | Oryza sativa |
transcript | LOC_Os08g33440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGATGAGCTATATGAGAAG GTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCTEST: gi|88584205|gb|CI701741.1|CI701741
genomic: CGATGAGCTATATGAGAAGgtgctatacc ... gtttggttagGTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCT
EST: GTGTGGGATACCCAATTGTGACCGATAAGCTCGATGAGCTATATGAGAAG GTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCTEST: gi|88365470|gb|CI680109.1|CI680109
genomic: GTGTGGGATACCCAATTGTGACCGATAAGCTCGATGAGCTATATGAGAAGgtgctatacc ... gtttggttagGTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCT
EST: GTGTGGGATACCCAATTGTGACCGATAAGCTCGATGAGCTATATGAGAAG GTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCTEST: gi|66912791|gb|CX099639.1|CX099639
genomic: GTGTGGGATACCCAATTGTGACCGATAAGCTCGATGAGCTATATGAGAAGgtgctatacc ... gtttggttagGTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCT
EST: GTGTGGGATACCCAATTGTGACCGATAAGCTCGATGAGCTATATGAGAAG GTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCTEST: gi|58688879|gb|CK077566.1|CK077566
genomic: GTGTGGGATACCCAATTGTGACCGATAAGCTCGATGAGCTATATGAGAAGgtgctatacc ... gtttggttagGTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCT
EST: GTGTGGGATACCCAATTGTGACCGATAAGCTCGATGAGCTATATGAGAAG GTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCT
genomic: GTGTGGGATACCCAATTGTGACCGATAAGCTCGATGAGCTATATGAGAAGgtgctatacc ... gtttggttagGTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCT
gtttattacattttggtcattttgttgattgttggggttgatttggtttggttagGTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCTATGGCACTTGCGCAGCACCCGGTGGTGAATGCTAGCTGCAGGGATGGGA
ttacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctatacctttggagactttgggggtggcagtgcttaacctcctgtgatggtttattacattttggtcattttgttgattgttggggttgatttggtttggttagGTCAAGTCAAAGGGGGTGACCATGACAGTTCTGCTGGCGAAGGCCGCAGCTATGGCACTTGCGCAGCACCCGGTGGTGAATGCTAGCTGCAGGGATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG