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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcatgtataacaataaggattcttactcaagcctttactgtctacctttgatttacctttgttactgtcaacctaatgttgctaaatcatttgtttagATGATAATGGATAAGATCTCCAGCGGTGAAGAAGTTGGCGGTGCTGGGGGTGCGTACTCATACAACGCATTGAAAAGACTGGATCAAATATGGTCTAGCA

Basic information

species Oryza sativa
transcript LOC_Os08g32630.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G851815_T01 (Zea mays), 3'ss of exon 1
-tagca-tgtataacaata-aggattcttactcaagcctttactgtctacctttgatttacctttgt-tactgtcaacctaatgttgctaaatcatttgtttagATGATAATGGATAAGATCTCCAGCGGTGAAGAAGTTGGCGGTGCTGGGGGTGCGTACTCATACAACGCATTGAAAAGACTGGATCAAATATGGTCTAGCA
 ||    ||||   ||||  || ||    |     || | |    |       |  | |   ||| | |  ||   |  |||  |  | || |||| |    ||||||||||||||||||||||    || |||| ||| || || ||||| || || |||||||| |  || ||||||||| ||||||||||||||||||| |
gtattggtgtacgccaattcagcatgaacatatttgcttgtttgtttggttcctcttctgattttatattttgatgaattaacatcacgaagtcatgt----agATGATAATGGATAAGATCTCTGCTGGCGAAGGAGTCGGAGGCGCTGGAGGGGCTTACTCATATAGTGCGTTGAAAAGATTGGATCAAATATGGTCTAGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctttgatttacctttgttactgtcaacctaatgttgctaaatcatttgtttagATGATAATGGATAAGATCTCCAGCGGTGAAGAAGTTGGCGGTGCTGGGGGTGCGTACTCATACAACGCATTGAAAAGACTGGATCAAATATGGTCTAGCA
                                    tgctaaa  putative branch site (score: 2)
                                              tttgttt  putative PPT
                                       taaatcatttgttta  TA-rich tract