1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcgtcttttctttctttctttctttatttctttttttgtttcattttcttccgtgggtggaagattctcctgcaactgcagattgctttggtgtaacctttattgttggatttttttttctttgttttgttttttgcccccctttgtttttgtagGAAGAGCACGAGGAGGAGGCGCCGATCTGTAGGGCTCGTTGTTAGTCATCTCGACCAAGGGACCGGTGAAGCT
species | Oryza sativa |
transcript | LOC_Os08g27040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGCCGCGGTAATGTGACCTCGCGCGCGGCACTCCGGGATTATCTAG GAAGAGCACGAGGAGGAGTGCGCCGATCTGTAGGGCTCGTTGTTAGTCATAEST: gi|218503050|gb|FG970338.1|FG970338
genomic: CCGCCGCCGCGGTAATGTGACCTCGCGCGCGGCACTCCGGGATTATCTAGgtgcgtcttt ... gtttttgtagGAAGAGCACGAGGAGGAG-GCGCCGATCTGTAGGGCTCGTTGTTAGTCATC
EST: CCGCCGCCGCGGT-ATGTGACCTCGCGCGCGGCACTCCGGGATTATCTAG GAAGAGCACGAGGAGGAGGCGCCGATCTGTAGGGCTCGTTGTTAGTCATAT
genomic: CCGCCGCCGCGGTAATGTGACCTCGCGCGCGGCACTCCGGGATTATCTAGgtgcgtcttt ... gtttttgtagGAAGAGCACGAGGAGGAGGCGCCGATCTGTAGGGCTCGTTGTTAGTCATCT
tattgttggatttttttttctttgttttgttttttgcccccctttgtttttgtagGAAGAGCACGAGGAGGAGGCGCCGATCTGTAGGGCTCGTTGTTAGTCATCTCGACCAAGGGACCGGTGAAGCT
tttttttttctttgtt CT-rich tract
atttttttttctttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtcttttctttctttctttctttatttctttttttgtttcattttcttccgtgggtggaagattctcctgcaactgcagattgctttggtgtaacctttattgttggatttttttttctttgttttgttttttgcccccctttgtttttgtagGAAGAGCACGAGGAGGAGGCGCCGATCTGTAGGGCTCGTTGTTAGTCATCTCGACCAAGGGACCGGTGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC