1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...taaggaagacaaggaaaaaaaaatgaaaagcaattgccttttttgtattttggtaccctgttgtagctaataatgttcttattgttctcctgacttacagGCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTTGTGGACTTG
species | Oryza sativa |
transcript | LOC_Os08g14570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGCTTCGCCAAG GCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTTEST: gi|88737205|gb|CI760713.1|CI760713
genomic: TCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGCTTCGCCAAGgtatccatcc ... tgacttacagGCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTT
EST: TCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGCTTCGCCAAG GCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTTEST: gi|88312458|gb|CI584981.1|CI584981
genomic: TCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGCTTCGCCAAGgtatccatcc ... tgacttacagGCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTT
EST: TCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGCTTCGCCAAG GCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTT
genomic: TCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGCTTCGCCAAGgtatccatcc ... tgacttacagGCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTT
tattttggtaccctgttgtagctaataatgttcttattgttctcctgacttacagGCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTTGTGGACTTG
tcctgac putative branch site (score: 10)
ttcttattgttctcct CT-rich tract
taataatgttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaggaagacaaggaaaaaaaaatgaaaagcaattgccttttttgtattttggtaccctgttgtagctaataatgttcttattgttctcctgacttacagGCACTCGCTGAGGAGGCTAAGTCAAGATACGACAAGGCGATATTCAAAGTTGTGGACTTG
- - gaagacaa
- - - - - - - aaaaaaa
- - - - - - - - - - - - - aaagcaa
- - - - - - - - - - - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt