1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatcaattcttagcgcataacatcttatcaacagaattacttggttatgtgtggtataattgaagatctcactctgtttatgccatgtgttgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAATTCCT
species | Oryza sativa |
transcript | LOC_Os08g09240.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|88963125|gb|CI026798.1|CI026798
genomic: TTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|88974162|gb|CI002783.1|CI002783
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: AGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|33671347|gb|CF299586.1|CF299586
genomic: AGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCNATCAGGGAGAAGTATCCCGATAGAEST: gi|58590250|gb|CF988558.1|CF988558
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGC-ATCAGGGAGAAGTATCCCGATAGA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|58586677|gb|CF984985.1|CF984985
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: GGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAGGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|163926759|gb|EG715047.1|EG715047
genomic: GGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAAEST: gi|218487512|gb|FG953689.1|FG953689
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
EST: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCG AAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
genomic: CAGGGCGCGCGTGATGGCGAGGAGCTCGTTCAAGCTGGAGCACCCACTCGgttcgtctca ... tgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAA
tatgtgtggtataattgaagatctcactctgtttatgccatgtgttgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAATTCCT
atctcac putative branch site (score: 56)
tataattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcaattcttagcgcataacatcttatcaacagaattacttggttatgtgtggtataattgaagatctcactctgtttatgccatgtgttgtgtcgcagAAAGGAGGCAGGCTGAGGCCAACCGCATCAGGGAGAAGTATCCCGATAGAATTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - caacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt