1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagaacagggcagagatcaaggcggatatatacagctagatctcatcttgttgctgtcgtctctaacacaggttttgatgggatttttgtttttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACGTGGCGTGCAAGCTAGCTATAGCCATTTCTGTGTGTGTAGCTGTACTGG
species | Oryza sativa |
transcript | LOC_Os08g08820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACEST: gi|88299897|gb|CI579958.1|CI579958
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
EST: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACEST: gi|29667380|gb|CB663655.1|CB663655
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
EST: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACEST: gi|29637184|gb|CB642193.1|CB642193
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
EST: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACEST: gi|88396466|gb|CI600949.1|CI600949
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
EST: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACEST: gi|58660905|gb|CK049585.1|CK049585
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
EST: GTGGTTTTCTCGCATGCGATATCACACGCTTCGTTGGGAAGCACNATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAEST: gi|88406178|gb|CI593958.1|CI593958
genomic: GTGGTTTTCTCGCATGCGATATCACACGCTTC-TT-GGAAGCAC-ATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTA
EST: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACEST: gi|58653250|gb|CK041930.1|CK041930
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
EST: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACEST: gi|117245156|gb|CT843369.1|CT843369
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
EST: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACEST: gi|58660827|gb|CK049507.1|CK049507
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
EST: CCGGGGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAG AGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
genomic: CCGGTGGTTTTCTCGCATGCGATATCACACGCTTCTTGGAAGCACATCAGgtagaacagg ... ttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTAC
ttgttgctgtcgtctctaacacaggttttgatgggatttttgtttttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACGTGGCGTGCAAGCTAGCTATAGCCATTTCTGTGTGTGTAGCTGTACTGG
tttttgtttttctttg CT-rich tract
atttttgtttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaacagggcagagatcaaggcggatatatacagctagatctcatcttgttgctgtcgtctctaacacaggttttgatgggatttttgtttttctttgcagAGTTCTTGGTGCTGACCTTGCCCTAGATCTGCTTCTGACTGTTGCTGTTACGTGGCGTGCAAGCTAGCTATAGCCATTTCTGTGTGTGTAGCTGTACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT