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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcctaaaaaatgtttagcgttgctgttttttttttctttagtgttttctcacagttcaatatttactcatctacaccattatttgatccaccttgcagGTTAAGTCAGCATAGCTAATAACTCCGTCTACTGTTGTGACCTCTGTGGTTTGCTTTGTGTGTTTGGCTTCCCAATCATCTGCATAAACCAGGAAGTGGG

Basic information

species Oryza sativa
transcript LOC_Os08g08220.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671040|gb|CK059726.1|CK059726
EST:     TCCTCCCGCCGCCGGGATCGATCTCCGCGGATTCGACGTGCTTCATCGAG                         GTTAAGTCAGCATAGCTAATAACTCCGTCTACTGTTGTGACCTCTGTGGTT
genomic: TCCTCCCGCCGCCGGGATCGATCTCCGCGGATTCGACG-GCTTCATCGAGgtatcctcgt ... caccttgcagGTTAAGTCAGCATAGCTAATAACTCCGTCTACTGTTGTGACCTCTGTGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctcacagttcaatatttactcatctacaccattatttgatccaccttgcagGTTAAGTCAGCATAGCTAATAACTCCGTCTACTGTTGTGACCTCTGTGGTTTGCTTTGTGTGTTTGGCTTCCCAATCATCTGCATAAACCAGGAAGTGGG
                                           tccacctt  CT-rich tract
           ttcaatattta  TA-rich tract