1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttttgctttcttaacatcttatgtactccattcttattcttggttgttgcacattcactagtatacctgttttctaaaacttttgatccttttgccagATGGCTGCTAGTCACTCAGGCCCTGGAAGTCCATGGTCGAGCTTTGAGGATCAG
species | Oryza sativa |
transcript | LOC_Os08g08000.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAAAGATCATTACAAACCGGGATCGTGGGAGAAAAAATAAAGTGCTCAAG ATGGCTGCTAGTCACTCAGGCCCTGGAAGTCCATGGTCGAGCTTTGAGGATEST: gi|29644348|gb|CB649355.1|CB649355
genomic: TAAAGATCATTACAAACCGGGATCGTGGGAGAAAAAATAAAGTGCTCAAGgtatatacct ... cttttgccagATGGCTGCTAGTCACTCAGGCCCTGGAAGTCCATGGTCGAGCTTTGAGGAT
EST: AAAAAATAAAGTGCTCAAG ATGGCTGCTAGTCACTCAGGCCCTGGAAGTCCATGGTCGAGCTTTGAGGAT
genomic: AAAAAATAAAGTGCTCAAGgtatatacct ... cttttgccagATGGCTGCTAGTCACTCAGGCCCTGGAAGTCCATGGTCGAGCTTTGAGGAT
ttgttgcacattcactagtatacctgttttctaaaacttttgatccttttgccagATGGCTGCTAGTCACTCAGGCCCTGGAAGTCCATGGTCGAGCTTTGAGGATCAG
cttttgatcctttt CT-rich tract
ttttctaaaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttgctttcttaacatcttatgtactccattcttattcttggttgttgcacattcactagtatacctgttttctaaaacttttgatccttttgccagATGGCTGCTAGTCACTCAGGCCCTGGAAGTCCATGGTCGAGCTTTGAGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - -tgctttc
- - - - - - - - - tcttatg
- - - - - - - - - - - - - - tccattc
- - - - - - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - - -ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -cattcac