1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gctttgtgctgtttctaagttggaatgtgctaacagcttgagttggtttctcttgttttgtttcttacgatattttgttaaatttgaattgaaggatcagGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAG
species | Oryza sativa |
transcript | LOC_Os08g07960.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|25799251|gb|CA755212.1|CA755212
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|29681300|gb|CB677575.1|CB677575
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|10794894|gb|AU108860.1|AU108860
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCNAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|29615879|gb|CB620891.1|CB620891
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATGCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTG GTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAEST: gi|88394449|gb|CI605790.1|CI605790
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGgttagcacat ... gaaggatcagGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAA
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|33793654|gb|CF322711.1|CF322711
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|88417412|gb|CI579073.1|CI579073
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|88356897|gb|CI620785.1|CI620785
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|88394469|gb|CI605810.1|CI605810
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTG GTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAEST: gi|88399681|gb|CI583415.1|CI583415
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGgttagcacat ... gaaggatcagGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAA
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|33795033|gb|CF323392.1|CF323392
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|88397869|gb|CI583187.1|CI583187
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAGEST: gi|88417428|gb|CI579089.1|CI579089
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
EST: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCCTGGATCAG
genomic: TCCCATCCATCCCGCGAGCGAGCGAGCGCTTCCGCCGCATCCTGGTCC----T--Ggttagcacat ... gaagg
gtttctcttgttttgtttcttacgatattttgttaaatttgaattgaaggatcagGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAG
ttcttac putative branch site (score: 2)
atattttgttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttgtgctgtttctaagttggaatgtgctaacagcttgagttggtttctcttgttttgtttcttacgatattttgttaaatttgaattgaaggatcagGTAGAAGGAGATGGCGACTCTTGGTCTTGCCCCAAACATGAATCCAAACAAGTCATTTGAG
- - - tgctgtt
- - - - - - - - - - - -aatgtgc
- - - - - - - - - - - - - - - - -cagcttg