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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagattctatttgtattttcagattttttttcccgatctcttcacttcttttaaattcagaggttctcatttttagttcatttcgtatttgctccacagAATCTTCGTCTACCTGCAGTCCCGTCGCTCTCTCACCAGCAGCCATGGCCGCGGATCCCACCACCGGCGGCGGCGAGGCGGAGTCCTTCTTCCGCGCCGC

Basic information

species Oryza sativa
transcript LOC_Os08g07880.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88664974|gb|CI706012.1|CI706012
EST:     CAGGCCGCAGGCAAGCTGCAACAACGGAGCAAAGTGTGAACCCGGACTGG                         AATCTTCGTCTACCTGCAGTCCCGTCGCTCTCTCACCAGCAGCCATGGCCG
genomic: CAGGCCGCAGGCAAGCTGCAACAACGGAGCAAAGTGTGAACCCGGACTGGgtacctgtct ... tgctccacagAATCTTCGTCTACCTGCAGTCCCGTCGCTCTCTCACCAGCAGCCATGGCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcttttaaattcagaggttctcatttttagttcatttcgtatttgctccacagAATCTTCGTCTACCTGCAGTCCCGTCGCTCTCTCACCAGCAGCCATGGCCGCGGATCCCACCACCGGCGGCGGCGAGGCGGAGTCCTTCTTCCGCGCCGC
                                           tttgctcc  CT-rich tract
 atttttagttcattt  TA-rich tract