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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccacctcctcctcctcctcccgactcttatctcgtttttcgcgtttcactgcctggctctcacgctttctactcgcgtcttggcgtcttgctcttgctgctgcgaacgaactgaagatggcatgttcagGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCCGCCGTGATCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCATC

Basic information

species Oryza sativa
transcript LOC_Os08g06880.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g06880.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G095969_T01 (Zea mays), 3'ss of exon 1
---------------------------gtacccacctcctcctcctcctcccgactcttatctcgtttttcgcgtttcactgcctggctctcacgctttctactcgcgt----cttggcgtcttgct--cttgctgctgcgaacgaactgaagatggcatgttcagGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCCGCCGTGATCGCCCGCGCGTGGGCGGCCGGCGTCGACCGCATCATC
                            |  |    | ||      ||||   |||  |  |  | || | | |  || ||  ||  ||||| | |  ||| | |||||       | || | | |   ||   |||||| |  |   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||  |||| ||||||||||| || |||||||| |||||||| 
gtaactcaaataccctccgtttcgctcttttcttagtgcttacgtacctcgtaactggttgcctgcttcttgtgcctctctctctctctctctctccctcttcccgcgtggcgtgcgccgccgtacgggctgtttgctgctactgccttgaagATGGCATGTTCAAGGGCATCTACCACGGCAAGCAGTGCCACGCCGCCGACATCCCGGCCGTACTCGCGCGCGCGTGGGCTGCAGGCGTCGATCGCATCAT-