1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcttgatttatctgcaattgcttgaaggccgcacattgtcaccccagtaaggttatgtttgattgttttcttacaccatcttgcatgatcttatgtttagGTATAGCAAACTTGGATTCTCTGGTAACTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCAGTCAGAGATGTGC
species | Oryza sativa |
transcript | LOC_Os08g03440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
agtaaggttatgtttgattgttttcttacaccatcttgcatgatcttatgtttagGTATAGCAAACTTGGATTCTCTGGTAACTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCAGTCAGAGATGTGC
ttcttac putative branch site (score: 17)
ttatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgatttatctgcaattgcttgaaggccgcacattgtcaccccagtaaggttatgtttgattgttttcttacaccatcttgcatgatcttatgtttagGTATAGCAAACTTGGATTCTCTGGTAACTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCAGTCAGAGATGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - -atctgca
- - - - - - - - -ttgcttg
- - - - - - - - - - - - - -gccgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga