1 5' 3' | 2 5' 3' | 3 5' 3' |
...attcccatatcacaccggtttgcatatcatgatgttagaaagcgcttcagattgattttagaggtgcgctgtgatgttcatatctgatgacaacccgcagATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGAT
species | Oryza sativa |
transcript | LOC_Os08g02390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAG ATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAEST: gi|30226890|gb|CB964782.1|CB964782
genomic: ACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGgtatacgcat ... caacccgcagATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACA
EST: ACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAG ATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAEST: gi|30226794|gb|CB964686.1|CB964686
genomic: ACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGgtatacgcat ... caacccgcagATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACA
EST: ACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAG ATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACA
genomic: ACGACCTCTACGAGCTCTTCAAGCCCTACGGCACCGTCCTCTCCGTTGAGgtatacgcat ... caacccgcagATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACA
ttcagattgattttagaggtgcgctgtgatgttcatatctgatgacaacccgcagATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGAT
atctgat putative branch site (score: 6)
attgatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcccatatcacaccggtttgcatatcatgatgttagaaagcgcttcagattgattttagaggtgcgctgtgatgttcatatctgatgacaacccgcagATTTCCCGTGACCCTGAGACTGGACTTAGCCGAGGATGTGGTTTCGTCACAATGCGTTCTCTCCCAGAAGCTCGGACAGCCATGAACGCTCTCGATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - -ttgcata
- - - - - - - - - - - - - -catgatg
- - - - - - - - - - - - - - - - - - - - - -gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatga