1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caaaaaagaatccctgtctagcccttataaaacctgttgttcagtatgttctctctttcctatagagataagactaacaccatattcattttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCCAGCATCTCCTATTCAGCAGGAAAGAGCAGCATTTTCTTGCTCTGCCTC
species | Oryza sativa |
transcript | LOC_Os07g48290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCEST: gi|88737522|gb|CI759403.1|CI759403
genomic: GTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCEST: gi|88742453|gb|CI765961.1|CI765961
genomic: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCEST: gi|58695306|gb|CK083993.1|CK083993
genomic: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: TTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCEST: gi|88760877|gb|CI770433.1|CI770433
genomic: TTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACNAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCEST: gi|88396980|gb|CI578129.1|CI578129
genomic: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGTTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCEST: gi|88761330|gb|CI770886.1|CI770886
genomic: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCEST: gi|88760743|gb|CI770299.1|CI770299
genomic: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCEST: gi|88386250|gb|CI572867.1|CI572867
genomic: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: AGCACCGCCACCGCCGGTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCAGTGGCATCEST: gi|58666792|gb|CK055478.1|CK055478
genomic: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
EST: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAG TCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
genomic: AGCACCGCCACCGCCGCTGTCGATCTTCTTCCCCGAGGCAAAGCCAGGAGgtctctacct ... ttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATC
atgttctctctttcctatagagataagactaacaccatattcattttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCCAGCATCTCCTATTCAGCAGGAAAGAGCAGCATTTTCTTGCTCTGCCTC
gactaac putative branch site (score: 12)
ttcattttgcttcc putative PPT
atattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaaagaatccctgtctagcccttataaaacctgttgttcagtatgttctctctttcctatagagataagactaacaccatattcattttgcttccagTCTAGACAAACTCAGCTTCATGAGTTCAAGTTCAGGAAAAGCACTGGCATCCAGCATCTCCTATTCAGCAGGAAAGAGCAGCATTTTCTTGCTCTGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG