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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgcgggttttcacgaaatccccgtgtatgttccccaccttgcactaacaatgtgccacaatggtgtttggtttcggctctgacattgcgcgcgctcatgtgcagGTGACCAGGGTCGAACACATGGAGGTGGAGGAGAAGAACCCGATCAACGTGCTCTACCGTGACCTCGTGCTGAGCGGCGATGTATTCGGGGCGCACTGCT

Basic information

species Oryza sativa
transcript LOC_Os07g47130.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47130.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G004334_T01 (Zea mays), 3'ss of exon 5
-------------------gtatatgcgggttttca--cgaaatccccgtgtatgttccccaccttgcacta-acaatg--tgccacaatggtgtttggtttcggctctgacattgcgcgcgctcatgtgcagGTGACCAGGGTCGAACACATGGAGGTGGAGGAGAAGAACCCGATCAACGTGCTCTACCGTGACCTCGTGCTGAGCGGCGATGTATTCGGGGCGCACTGCT
                   |   ||||   | | ||   |   ||| |||| | || |    || ||  | |  | |||  |||  | |  |   |    |    |  | | ||   | | ||     || |||||||| ||||||||||||||||| | ||| ||| |  |||||||||||| || |||||  |||| |||||||||||||  |  |||||||||||| |||
gtggtcgacgcgacgagcggctcatgctcctgtgcagctgtgctccacgtgcacgtgcattgccctgtgccacgccatggttgctgccactgacctgacctgacacgttcatatcatgtgtgc-----tgtagGTGACCTGGGTCGAACACATGGAGATCGAGCAGATGCTCCCGATCAACGTCCTTTACCGCAACCTGGTGCTGAGCGGCGCCGCGTTCGGGGCGCACCGCT

upper sequence: LOC_Os07g47130.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G062318_T01 (Zea mays), 3'ss of exon 5
---gtatatgcg--ggttttcacgaaatccccgtgta--tgttccccacct-----tgcactaacaatgtgccacaatggtgtttggtttcggctctgacattgcgcg--cgctcatg-tgcagGTGACCAGGGTCGAACACATGGAGGTGGAGGAGAAGAACCCGATCAACGTGCTCTACCGTGACCTCGTGCTGAGCGGCGATGTATTCGGGGCGCACTGCT
    |  | |||  |     | |     ||| ||| |  ||| | |||| |     |||| |  |  ||||| || |||||   ||     | | ||||| |  | ||  ||  | || ||||||||||| ||||||||||| ||||| | ||| | | |  |||||||||||| ||||||||  ||||||||||||||||||  |  |||||||||||| |||
gtgatcgacgcgacgaccagctcatggcccctgtgcagctgtgctccacgtgcgcgtgcattg-ccctgtgctacgatggttggtgcccctgac-ctgacctgacacgttcgtgcgtgctgcagGTGACCTGGGTCGAACACTTGGAGATCGAGCACATGCTCCCGATCAACGTCCTCTACCGCAACCTCGTGCTGAGCGGCGCCGCGTTCGGGGCGCACCGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgccacaatggtgtttggtttcggctctgacattgcgcgcgctcatgtgcagGTGACCAGGGTCGAACACATGGAGGTGGAGGAGAAGAACCCGATCAACGTGCTCTACCGTGACCTCGTGCTGAGCGGCGATGTATTCGGGGCGCACTGCT
                           ctctgac  putative branch site (score: 3)