1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtctcgataccaaatcccgatttctcaacctgaatcccccccccacgttcctcgtttcaatctgttcgtctgcgaatcgaattctttgtttttttttctctaattttaccgggaattgtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCATCTTGCGGCGGAAATCTCGCTCTCTTCTCTGCGGTGGGTGGCCGGAGAA
species | Oryza sativa |
transcript | LOC_Os07g47100.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG GCGTTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCAEST: gi|88337157|gb|CI628243.1|CI628243
genomic: GAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCAEST: gi|88358188|gb|CI605113.1|CI605113
genomic: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCAEST: gi|88394573|gb|CI605914.1|CI605914
genomic: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: GAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCAEST: gi|86904058|gb|CI304492.1|CI304492
genomic: GAAGAGAGTTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCAEST: gi|88343544|gb|CI621912.1|CI621912
genomic: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
EST: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAG GCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
genomic: TTTTGTAGCGAGCTCGCGCGAATGCGAAGCCAACCGAGAGAGgtctcgatac ... gtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCA
cgaatcgaattctttgtttttttttctctaattttaccgggaattgtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCATCTTGCGGCGGAAATCTCGCTCTCTTCTCTGCGGTGGGTGGCCGGAGAA
ctctaat putative branch site (score: 3)
aattctttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcgataccaaatcccgatttctcaacctgaatcccccccccacgttcctcgtttcaatctgttcgtctgcgaatcgaattctttgtttttttttctctaattttaccgggaattgtcgaattagGCATTCACCAACGAGCAAGAGGGGAGTGGATTGGTTGGTTAAAGCTCCGCATCTTGCGGCGGAAATCTCGCTCTCTTCTCTGCGGTGGGTGGCCGGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA