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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagtaatcagagattcagagtactaaacttcagtgcaggtgagatggtaaatggtgctcattgttgttaccgtgttcttgtgtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATAGGTACAAG

Basic information

species Oryza sativa
transcript LOC_Os07g46280.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88827210|gb|CI777775.1|CI777775
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88719088|gb|CI742598.1|CI742598
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|29642035|gb|CB647042.1|CB647042
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88349963|gb|CI634498.1|CI634498
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|29664412|gb|CB660687.1|CB660687
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88695207|gb|CI739245.1|CI739245
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCA
EST: gi|88722865|gb|CI746375.1|CI746375
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|33653413|gb|CF276027.1|CF276027
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88397812|gb|CI583130.1|CI583130
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88354186|gb|CI637752.1|CI637752
EST:     GCAGGGTGGCCGGGGCCCTACCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCC-TAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
EST: gi|88330839|gb|CI636851.1|CI636851
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|58673231|gb|CK061917.1|CK061917
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88349609|gb|CI632744.1|CI632744
EST:     GCAGGGTGGCCGGGGCCCTACCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88724796|gb|CI748055.1|CI748055
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|88694088|gb|CI738126.1|CI738126
EST:     GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAG                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
genomic: GCAGGGTGGCCGGGGCCCTAGCATCTGGGACGCTTTCATAGAGAAACCAGgtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATA
EST: gi|44664928|gb|CR278362.1|CR278362
EST:     GGACGCTTTCATAGCAGAAACCAGT                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
genomic: GGACGCTTTCATAG-AGAAACCAG-gtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
EST: gi|44664928|gb|CR278362.1|CR278362
EST:     GGACGCTTTCATAGCAGAAACCAGT                         GGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT
genomic: GGACGCTTTCATAG-AGAAACCAG-gtaaaagtaa ... gtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtgagatggtaaatggtgctcattgttgttaccgtgttcttgtgtcctgacagGGACGATCCCTAATAATGCCACAGCCGATGTGACGGTTGATGAGTATCATAGGTACAAG
           taaat  TA-rich tract