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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcacctatgcttttgcaagagtttcatatatttgttaaatacaatcttcttcaggtttcatagtatgtgtctttttgctccatataatgtggcagGAAAACCACAATCCTTACCTGGAATTGACTTTAGCTCCACGAAAGAAGATATCTTCAGTTGTGCAGCATCTGAACATAAAATGGGGCAATTCTCAGTGTG

Basic information

species Oryza sativa
transcript LOC_Os07g44030.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g44030.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G062230_T02 (Zea mays), 3'ss of exon 3
gtgagcacctatgc-----------ttttgcaagagtttcatata-----tttgttaaatacaatcttcttc--aggtttcata------gtatgtgt----ctttttgctccatataatgtggcagGAAAACCACAATCCTTACCTGGAATTGACTTTAGCTCCACGAAAGAAGATATCTTCAGTTGTGCAGCATCTGAACATAAAATGGGGCAATTCTCAGTGTG
||||| |||| |||           |||||  | || || |||||       ||  | | | | || | ||   |||||   |        ||| ||     ||| || || |||  |||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || ||| || | ||||||||||| | ||||||||||| |||||||||||
gtgagtacctctgcacctcagttttttttggtatagcttaatataagcaccatgccacaaatagtcctgtttgaaggttctttctctcttatatttgcattgcttattacttcatgcaatgtgacagGAAAAACACAATCCTTACCTTGAATTGACTTTGGCTCCTCGAAAGAAGATGTCCTCAATTTTACAGCATCTGAATACAAAATGGGGCAGTTCTCAGTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatcttcttcaggtttcatagtatgtgtctttttgctccatataatgtggcagGAAAACCACAATCCTTACCTGGAATTGACTTTAGCTCCACGAAAGAAGATATCTTCAGTTGTGCAGCATCTGAACATAAAATGGGGCAATTCTCAGTGTG
                                         atataatgt  TA-rich tract