1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttttctgtaaaatttttttggggttcctcgtggtggtttgactcgcgtgcgactccgagagagctctcctgatgccatgcatggtgtgttctgtttcagTCACTCGTTCGAGCATGGGGGCTTTTGCGAGACTTTCCATTTGGAGGTTGCCGGGTGGAGGAACTGCGAATCCTGCGGGAAG
species | Oryza sativa |
transcript | LOC_Os07g37610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCGCCGAGCTCTGCGACCGATGCTA TCACTCGTTCGAGCATGGGGGCTTTTGCGAGACTTTCCATTTGGAGGTTGC
genomic: CTTCGCCGAGCTCTGCGACCGATGCTAgtacgtacgg ... tctgtttcagTCACTCGTTCGAGCATGGGGGCTTTTGCGAGACTTTCCATTTGGAGGTTGC
gcgtgcgactccgagagagctctcctgatgccatgcatggtgtgttctgtttcagTCACTCGTTCGAGCATGGGGGCTTTTGCGAGACTTTCCATTTGGAGGTTGCCGGGTGGAGGAACTGCGAATCCTGCGGGAAG
tcctgat putative branch site (score: 12)
ttctgtttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttctgtaaaatttttttggggttcctcgtggtggtttgactcgcgtgcgactccgagagagctctcctgatgccatgcatggtgtgttctgtttcagTCACTCGTTCGAGCATGGGGGCTTTTGCGAGACTTTCCATTTGGAGGTTGCCGGGTGGAGGAACTGCGAATCCTGCGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- -ttctgta
- - - - - - - - - - - - - - -cgtggtg
- - - - - - - - - - - - - - - - - - - - - - cgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgg