1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagccaacgcccgcgatcccaccactcctctcgagtcgctcgcttgcgagcgcgcgcgcggtgcggcgcggcgtcaccccgatcgctgtggttggggattttccgggggttcgatcggatccgtgggctgaggaaaccggggggcgttttgatctgatccgtggcttgatttttcgtctgctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCAG
species | Oryza sativa |
transcript | LOC_Os07g36465.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAG GTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAG-TGACCACCGAGCEST: gi|33663505|gb|CF294472.1|CF294472
genomic: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGC
EST: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAG GTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCEST: gi|88389201|gb|CI597999.1|CI597999
genomic: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGC
EST: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAG GTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCEST: gi|88449975|gb|CI572106.1|CI572106
genomic: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGC
EST: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAG GTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCEST: gi|88344988|gb|CI625834.1|CI625834
genomic: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGC
EST: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAG GTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCEST: gi|88417555|gb|CI581578.1|CI581578
genomic: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGC
EST: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAG GTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCEST: gi|58670310|gb|CK058996.1|CK058996
genomic: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGC
EST: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAG GTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCEST: gi|58659574|gb|CK048254.1|CK048254
genomic: CGCCGCGCACCTCCCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGC
EST: CCGAT-CCTCCCTCCGCTCGCTCGCCCATCGCGCCAG TEST: gi|58659574|gb|CK048254.1|CK048254
genomic: CCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcag-
EST: CCGAT-CCTCCCTCCGCTCGCTCGCCCATCGCGCCAG T
genomic: CCGATCCCTCCCTCCGCTCGCTCGCCCATCGCGCCAGgtgagccaac ... gctcttgcag-
aaccggggggcgttttgatctgatccgtggcttgatttttcgtctgctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCAG
tttttcgtctgctctt CT-rich tract
ttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccaacgcccgcgatcccaccactcctctcgagtcgctcgcttgcgagcgcgcgcgcggtgcggcgcggcgtcaccccgatcgctgtggttggggattttccgggggttcgatcggatccgtgggctgaggaaaccggggggcgttttgatctgatccgtggcttgatttttcgtctgctcttgcagGTGGGCTCTTTGGACACCCGGTGATGGATCACGCGGAGCTGACCACCGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG