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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgcttttgttttcttatgtgacctgtttttgaccaattgttatctcaaaatatatgttccttcctcctggtgaataaacttgaatatatctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGAT

Basic information

species Oryza sativa
transcript LOC_Os07g32230.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88340318|gb|CI652667.1|CI652667
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88398869|gb|CI601205.1|CI601205
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88352960|gb|CI630138.1|CI630138
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88407261|gb|CI583719.1|CI583719
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCG-CATGTCGATGTCACTGTT-CATGGGATGGATTTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88328705|gb|CI678506.1|CI678506
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88740633|gb|CI764141.1|CI764141
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88331761|gb|CI640792.1|CI640792
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88336969|gb|CI627049.1|CI627049
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|86899113|gb|CI298045.1|CI298045
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|95101041|gb|CI692769.1|CI692769
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88290668|gb|CI667041.1|CI667041
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88372649|gb|CI612577.1|CI612577
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88332127|gb|CI643544.1|CI643544
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|115595411|gb|CT845119.1|CT845119
EST:     ACAAGTCAGAGCAAGGGGCCTCGCCGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|33691746|gb|CF319985.1|CF319985
EST:     AAGTC-GAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: AAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88349134|gb|CI678104.1|CI678104
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88576604|gb|CI670749.1|CI670749
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|33680754|gb|CF308993.1|CF308993
EST:     AAGTCAGAGC-AGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: AAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88395933|gb|CI593135.1|CI593135
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88317045|gb|CI625682.1|CI625682
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88585467|gb|CI703100.1|CI703100
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88306539|gb|CI671291.1|CI671291
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88346262|gb|CI635740.1|CI635740
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88359188|gb|CI617853.1|CI617853
EST:     ACAAGTCAGAGGAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|58686677|gb|CK075364.1|CK075364
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88579551|gb|CI688553.1|CI688553
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88356004|gb|CI653414.1|CI653414
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88299408|gb|CI572360.1|CI572360
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGATCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88344774|gb|CI624425.1|CI624425
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGGGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88415061|gb|CI583884.1|CI583884
EST:     CAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: CAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAG-CCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|33682368|gb|CF310607.1|CF310607
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88569597|gb|CI660772.1|CI660772
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88745470|gb|CI768830.1|CI768830
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88337021|gb|CI627101.1|CI627101
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88321822|gb|CI672967.1|CI672967
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88588846|gb|CI706688.1|CI706688
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88343802|gb|CI654838.1|CI654838
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88763084|gb|CI772640.1|CI772640
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88382289|gb|CI633147.1|CI633147
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88575753|gb|CI669898.1|CI669898
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88349796|gb|CI634331.1|CI634331
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88344299|gb|CI655693.1|CI655693
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88357786|gb|CI625037.1|CI625037
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88412617|gb|CI690362.1|CI690362
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
EST: gi|88345792|gb|CI631060.1|CI631060
EST:     ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAG                         GCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG
genomic: ACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 61 (downstream exon)
Score: 21

TCTCTCTCTCTCTCTGTGCACACCCCGGGAGGAGGAACCGAGGGAGGAGGACAAGTCAGAGCAAGGGGCCTCGACGGCGGCGAAGCCCTCCAACTCACAGgtgagagacc ... ctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaatatatgttccttcctcctggtgaataaacttgaatatatctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGAT
                                            tctatct  CT-rich tract
                            aataaacttgaatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcttttgttttcttatgtgacctgtttttgaccaattgttatctcaaaatatatgttccttcctcctggtgaataaacttgaatatatctatctacagGCGCCATGTCGATGTCACTGTTCCCTGGGATGGATCTTACGAAAATGGATGCTCCTACTCTTACCCTCCTTGGAGCAGCCTGCTGTGTAATGCTATCGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG