1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtataagggaccccccgcctctcgctccgcctgcgccccgccgcgccgcgcgtgtttagggttagggttttgggggtggaccacctctcctcccccctctgatttcgatctaatgtcagttcgttgatgcagCTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGA
species | Oryza sativa |
transcript | LOC_Os07g30840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAG CTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCEST: gi|86821685|gb|CI309190.1|CI309190
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAGgtataaggga ... gttgatgcagCTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAG CTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCEST: gi|88574651|gb|CI666420.1|CI666420
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAGgtataaggga ... gttgatgcagCTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAG CTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCEST: gi|88331918|gb|CI642143.1|CI642143
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAGgtataaggga ... gttgatgcagCTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAG CTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCEST: gi|88357936|gb|CI650672.1|CI650672
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAGgtataaggga ... gttgatgcagCTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCC
EST: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAG CTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCC
genomic: CGGCCCTCTTCGCCTTCTCCGAGCTCCTCTCCCTCCCCGCCCTCTCCAAGgtataaggga ... gttgatgcagCTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCC
ggaccacctctcctcccccctctgatttcgatctaatgtcagttcgttgatgcagCTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGA
atctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataagggaccccccgcctctcgctccgcctgcgccccgccgcgccgcgcgtgtttagggttagggttttgggggtggaccacctctcctcccccctctgatttcgatctaatgtcagttcgttgatgcagCTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG