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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattgccattgcttccttttgcccttttgatttttcattatatgatgtagagagaaaattatatatcttatcgcatcgatgctttatttttcgttgtgaaagGGATGTGAATCTGTGGTTGCAAGATACTGAAGAAAGTAATAAGGTGGTTCTTCAATCTTCATAGGCTTCAGAGTTCAGAGTTGAGTTAATGTTTTTGCAA

Basic information

species Oryza sativa
transcript LOC_Os07g30160.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27546591|gb|CA764571.2|CA764571
EST:     GATC-TGAGGAGATT-AGGTGGTTTCTTGAAA                         GGATGTGAATCTGTGGTTGCAAGATACTGAAGAAAGTAATAAGGTGGTTCT
genomic: GATCATGAGGAGATTCAGGTGGTTTCTTGAAAgtatgtattg ... gttgtgaaagGGATGTGAATCTGTGGTTGCAAGATACTGAAGAAAGTAATAAGGTGGTTCT
EST: gi|88306009|gb|CI635009.1|CI635009
EST:     TTTGTGTTCTGATCATGAGGAGATTCAGGTGGTTTCTTGAAA                         GGATGTGAATCTGTGGTTGCAAGATACTGAAGAAAGTAATAAGGTGGTTCT
genomic: TTTGTGTTCTGATCATGAGGAGATTCAGGTGGTTTCTTGAAAgtatgtattg ... gttgtgaaagGGATGTGAATCTGTGGTTGCAAGATACTGAAGAAAGTAATAAGGTGGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagagaaaattatatatcttatcgcatcgatgctttatttttcgttgtgaaagGGATGTGAATCTGTGGTTGCAAGATACTGAAGAAAGTAATAAGGTGGTTCTTCAATCTTCATAGGCTTCAGAGTTCAGAGTTGAGTTAATGTTTTTGCAA
                                  ctttatttttcgtt  CT-rich tract
     agaaaattatatatct  TA-rich tract