1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttttggttatgcttagtgtcacctattatatatggctgcagaatcattttagtattatataaatttatgaactaaagatgcttgtacttttttttacagGTACGAGGATGAGCCCCCAGAACCTGAGATTGAG
species | Oryza sativa |
transcript | LOC_Os07g27930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGAGCGAGCGCCATGGCGGAGGACGACTACAACGAAATGGACATGGG GTACGAGGATGAGCCCCCAGAAACTGAGATTGAGEST: gi|88306243|gb|CI636628.1|CI636628
genomic: GGAGGAGCGAGCGCCATGGCGGAGGACGACTACAACGACATGGACATGGGgttcgcctct ... ttttttacagGTACGAGGATGAGCCCCCAGAACCTGAGATTGAG
EST: GGAGGAGCGAGCGCCATGGCGGAGGACGACTACAACGACATGGACATGGG GTACGAGGATGAGCCCCCAGAACCTGAGATTGAGEST: gi|58590685|gb|CF988993.1|CF988993
genomic: GGAGGAGCGAGCGCCATGGCGGAGGACGACTACAACGACATGGACATGGGgttcgcctct ... ttttttacagGTACGAGGATGAGCCCCCAGAACCTGAGATTGAG
EST: GAGGAGCGAGCGCCATGGCGGAGGACTGACTACAACGACATGGACATGGG GTACGAGGATGAGCCCCCAGAACCTGAGATTGAGEST: gi|88425718|gb|CI689371.1|CI689371
genomic: GAGGAGCGAGCGCCATGGCGGAGGAC-GACTACAACGACATGGACATGGGgttcgcctct ... ttttttacagGTACGAGGATGAGCCCCCAGAACCTGAGATTGAG
EST: GGAGGAGCGAGCGCCATGGCGGAGGACGACTACAACGACATGGACATGGG GTACGAGGATGAGCCCCCAGAACCTGAGATTGAG
genomic: GGAGGAGCGAGCGCCATGGCGGAGGACGACTACAACGACATGGACATGGGgttcgcctct ... ttttttacagGTACGAGGATGAGCCCCCAGAACCTGAGATTGAG
cattttagtattatataaatttatgaactaaagatgcttgtacttttttttacagGTACGAGGATGAGCCCCCAGAACCTGAGATTGAG
aactaaa putative branch site (score: 47)
cttgtactttttttt putative PPT
tagtattatataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttggttatgcttagtgtcacctattatatatggctgcagaatcattttagtattatataaatttatgaactaaagatgcttgtacttttttttacagGTACGAGGATGAGCCCCCAGAACCTGAGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - tatgctt
- - - - - - - - - - - - - - - - - -gctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcttg