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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagattctgctgtacactactgaaatttatgcttccatacccttttgtgtggtcagaggtttcttttgtcatgattgggttgaacattcttttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTCAACAAAAGGTCTTGCCAATTAACACAGTGAAGGATAATTCTGGCTTGAG

Basic information

species Oryza sativa
transcript LOC_Os07g25710.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88444973|gb|CI589451.1|CI589451
EST:     GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG                         ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTC
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: gi|66915305|gb|CX102153.1|CX102153
EST:     GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG                         ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNNGGAAAATCGAGT
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTC-TTTTTTTGGAAAATCGAGT
EST: gi|58689413|gb|CK078100.1|CK078100
EST:     GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG                         ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTC
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: gi|29613089|gb|CB618102.1|CB618102
EST:     GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG                         ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTC
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: gi|13420508|gb|AU174598.1|AU174598
EST:     GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG                         ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTC
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: gi|29673025|gb|CB669300.1|CB669300
EST:     GCGACCGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG                         ATGTGTCAGCCCTAGGAGAGGAGAACCTTTCNNNNNNNGGAAAATCGAGTC
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: gi|88386640|gb|CI682782.1|CI682782
EST:     GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG                         ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTC
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC
EST: gi|58663904|gb|CK052590.1|CK052590
EST:     GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAG                         ATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCNNNNNNNGGAAAATCGAGTC
genomic: GCGAAGGATTCGGGCTCAGCTCCTCCGCCTCCGCCGATCTCTCGCCGGAGgtgaggcctc ... tttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtggtcagaggtttcttttgtcatgattgggttgaacattcttttgttgcagATGTGTCAGCCCTAGGAGAGGAGAAGCTTTCTTTTTTTGGAAAATCGAGTCAACAAAAGGTCTTGCCAATTAACACAGTGAAGGATAATTCTGGCTTGAG
                                         ttcttttgtt  CT-rich tract
              tttctttt  TA-rich tract