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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctattgcctactgcagcgggaaagaaatgtttctgcgctagtaatgttacgccatcgtcaatcaattcccggtgacatttcaatctgctttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG

Basic information

species Oryza sativa
transcript LOC_Os07g22720.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88300347|gb|CI584766.1|CI584766
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88386942|gb|CI629269.1|CI629269
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88386965|gb|CI629292.1|CI629292
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88316027|gb|CI618903.1|CI618903
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88719018|gb|CI742528.1|CI742528
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88354508|gb|CI628879.1|CI628879
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCG
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCG
EST: gi|88345753|gb|CI631021.1|CI631021
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|86909491|gb|CI304683.1|CI304683
EST:     CTTCTCCCGTCGACATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88723264|gb|CI746774.1|CI746774
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88400796|gb|CI616801.1|CI616801
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|117233831|gb|CT842341.1|CT842341
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88337731|gb|CI632233.1|CI632233
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACT
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACT
EST: gi|88351581|gb|CI628801.1|CI628801
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88337819|gb|CI632321.1|CI632321
EST:     CTTCTCCCGTNGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTACACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88301479|gb|CI597172.1|CI597172
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88353015|gb|CI630193.1|CI630193
EST:     CTTCTCCCGTCGCCATGTTCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAG
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAG
EST: gi|88397241|gb|CI580751.1|CI580751
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88386898|gb|CI629225.1|CI629225
EST:     CTTCTCCCGTCGCNATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGGGGAGTTCACACAATGCTC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTC
EST: gi|88329570|gb|CI650024.1|CI650024
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTACACTGTGAGCGTTCCTGGCCTCGTGCG
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTC-TGGCCTCGTGCG
EST: gi|568812|gb|D39661.1|D39661
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTNCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGT
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGT
EST: gi|88373395|gb|CI614731.1|CI614731
EST:     CTTCTCCCGTCGCCATGTCCGCCGTGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88337603|gb|CI630900.1|CI630900
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTC
EST: gi|88416059|gb|CI594171.1|CI594171
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88337429|gb|CI630726.1|CI630726
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGGGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88719499|gb|CI743009.1|CI743009
EST:     CTTCTCCCGTCGCCATGTCCGCCGNGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88728091|gb|CI751601.1|CI751601
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88345182|gb|CI628436.1|CI628436
EST:     CTTCTCCCGTCGCCATGTNCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGT
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGT
EST: gi|88345084|gb|CI628338.1|CI628338
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88337595|gb|CI630892.1|CI630892
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88722411|gb|CI745921.1|CI745921
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88394949|gb|CI607676.1|CI607676
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCAGTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88337269|gb|CI629559.1|CI629559
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88385233|gb|CI630334.1|CI630334
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88345200|gb|CI628454.1|CI628454
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACCAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCG
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACAC-AATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCG
EST: gi|88386959|gb|CI629286.1|CI629286
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTATACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|88371619|gb|CI602797.1|CI602797
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGGGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: gi|29636053|gb|CB641062.1|CB641062
EST:     CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG                         TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttacgccatcgtcaatcaattcccggtgacatttcaatctgctttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG
                                        tctgcttt  CT-rich tract
                aatcaatt  TA-rich tract