1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atctattgcctactgcagcgggaaagaaatgtttctgcgctagtaatgttacgccatcgtcaatcaattcccggtgacatttcaatctgctttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG
species | Oryza sativa |
transcript | LOC_Os07g22720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCCCGTCGCCATGTCCGCCGTGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88719499|gb|CI743009.1|CI743009
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGNGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88354508|gb|CI628879.1|CI628879
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGEST: gi|88400796|gb|CI616801.1|CI616801
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCG
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88723264|gb|CI746774.1|CI746774
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88337731|gb|CI632233.1|CI632233
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTEST: gi|88353015|gb|CI630193.1|CI630193
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACT
EST: CTTCTCCCGTCGCCATGTTCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGEST: gi|88398389|gb|CI595790.1|CI595790
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAG
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88386898|gb|CI629225.1|CI629225
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCNATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGGGGAGTTCACACAATGCTCEST: gi|568812|gb|D39661.1|D39661
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTNCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTEST: gi|88337603|gb|CI630900.1|CI630900
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGT
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCEST: gi|88416059|gb|CI594171.1|CI594171
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTC
EST: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCEST: gi|88345182|gb|CI628436.1|CI628436
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGC
EST: CTTCTCCCGTCGCCATGTNCGCCGCGCATCTCCTCCGCCACTCTCGCAAG TTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGT
genomic: CTTCTCCCGTCGCCATGTCCGCCGCGCATCTCCTCCGCCACTCTCGCAAGgttcgtctct ... tttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGT
atgttacgccatcgtcaatcaattcccggtgacatttcaatctgctttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG
tctgcttt CT-rich tract
aatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctattgcctactgcagcgggaaagaaatgtttctgcgctagtaatgttacgccatcgtcaatcaattcccggtgacatttcaatctgctttactgcagTTGCGGAGTTTACACAATGCTCTAGACTGTGAGCGTTCTGGCCTCGTGCGCTACTTCTCCACTGCTTCTGGTTCGTTCCCCACCAAGGGAAATG
- ctattgc
- - - - -ctactgc
- - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - -tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatctgc